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NC_029030.1__YP_009220176.1__AVT41_gp25__00025
Bact-VirNC_029030.1__YP_009220176.1__AVT41_gp25__00025
Identity
- Accession:
- NC_029030 ↗
- Kingdom:
- phage
Quality
90.1
mean pLDDT
Taxonomy
TaxID: 1647391
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-66
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1aoaA02 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.64 | 49.0 | 3.93e-01 | 81.5% | 96.1% |
| 2vzbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 39.0 | 3.06e-01 | 81.5% | 58.1% |
| 1g71A02 | 1.10.8.160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA primase S; domain 2 | 0.52 | 40.0 | 3.49e-01 | 86.2% | 91.7% |
| 2jbwA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.51 | 40.0 | 3.53e-01 | 90.8% | 90.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3787785 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 30.0 | 3.57e-01 | 73.8% | 66.7% |
| 4655578 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.61 | 53.0 | 3.70e-01 | 100.0% | 89.1% |
| 3505945 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 44.0 | 3.60e-01 | 84.6% | 91.1% |
| 3961958 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.57 | 44.0 | 3.93e-01 | 84.6% | 94.7% |
| 3461742 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.54 | 43.0 | 3.28e-01 | 89.2% | 57.5% |
| 3506444 | 376.1.1.138 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › E3_UbLigase_R4 | 0.51 | 36.0 | 2.77e-01 | 75.4% | 84.7% |
| 4022050 | 7579.1.1.51 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF676 | 0.50 | 42.0 | 2.82e-01 | 95.4% | 51.4% |