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NC_029044.1__YP_009221280.1__AWH68_gp170__00150

Bact-Vir

NC_029044.1__YP_009221280.1__AWH68_gp170__00150

Identity

Accession:
NC_029044 ↗
Kingdom:
phage

Quality

67.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-45
PDB
Domain cluster: representative
D2 high residues 64-119
PDB
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.70 49.0 5.08e-01 75.0% 84.3%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.65 56.0 3.50e-01 100.0% 40.1%
2dg1C00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.65 55.0 3.47e-01 100.0% 40.3%
3l2pA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 45.0 3.50e-01 73.2% 76.7%
1z8gA01 3.10.250.10 Alpha Beta › Roll › Mac-2 Binding Protein › SRCR-like domain 0.64 44.0 3.58e-01 73.2% 99.0%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 53.0 3.47e-01 100.0% 44.6%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 53.0 3.37e-01 100.0% 36.2%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.63 52.0 4.03e-01 100.0% 74.5%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.62 48.0 4.06e-01 83.9% 61.1%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.62 44.0 3.30e-01 76.8% 80.1%
4yy8A02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.62 52.0 3.39e-01 100.0% 40.6%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.62 53.0 3.35e-01 98.2% 35.2%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.62 43.0 3.25e-01 75.0% 66.7%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 50.0 3.29e-01 100.0% 26.4%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.61 42.0 4.55e-01 82.1% 93.0%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 50.0 3.13e-01 96.4% 50.0%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 47.0 3.01e-01 89.3% 39.2%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.61 46.0 3.44e-01 82.1% 44.6%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 51.0 3.30e-01 100.0% 53.9%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.18e-01 100.0% 31.5%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.60 51.0 3.30e-01 100.0% 43.3%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 47.0 2.94e-01 91.1% 38.4%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.59 49.0 3.05e-01 100.0% 49.7%
3ii7A00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.59 49.0 3.19e-01 98.2% 44.8%
5ov3B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.20e-01 100.0% 35.3%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 48.0 3.09e-01 100.0% 33.9%
4j0wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 49.0 3.12e-01 100.0% 42.5%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 2.97e-01 100.0% 39.1%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.56 46.0 2.93e-01 96.4% 37.7%
2qjcA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 41.0 2.81e-01 80.4% 20.7%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 44.0 2.81e-01 94.6% 26.4%
1v58A01 3.10.450.70 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Disulphide bond isomerase, DsbC/G, N-terminal 0.56 39.0 3.66e-01 75.0% 100.0%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.55 37.0 3.75e-01 76.8% 69.6%
4akrA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.55 39.0 3.28e-01 85.7% 40.6%
4l8jA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.55 40.0 3.34e-01 78.6% 64.3%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 3.65e-01 98.2% 64.5%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.52 39.0 2.78e-01 82.1% 97.8%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 38.0 3.25e-01 94.6% 46.5%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 36.0 3.56e-01 76.8% 91.5%
1nnwB00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 38.0 2.62e-01 87.5% 89.6%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 35.0 2.57e-01 76.8% 42.0%
2otnB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 41.0 3.21e-01 100.0% 74.0%
8dc1A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 40.0 2.72e-01 96.4% 96.8%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3338677 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.69 57.0 3.51e-01 89.3% 34.2%
3362134 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.69 60.0 3.75e-01 96.4% 31.8%
3819869 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.66 46.0 3.89e-01 78.6% 43.2%
3273270 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 52.0 3.44e-01 91.1% 36.9%
3342083 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 58.0 3.64e-01 100.0% 39.3%
3822901 5.1.3.155 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_2 0.65 57.0 3.53e-01 98.2% 31.1%
3620101 391.1.2.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.65 49.0 4.60e-01 82.1% 91.4%
3698253 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.65 57.0 3.35e-01 100.0% 29.9%
3199763 220.1.1.202 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.64 45.0 3.54e-01 75.0% 39.2%
3993098 5.1.5.52 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.64 55.0 3.13e-01 96.4% 43.6%
3178364 319.1.1.19 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29696 0.63 42.0 3.50e-01 76.8% 37.1%
3816749 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.63 49.0 3.12e-01 89.3% 42.5%
4026848 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.63 53.0 3.36e-01 96.4% 40.3%
3271043 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.63 45.0 3.14e-01 76.8% 34.7%
3342566 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.63 48.0 3.09e-01 89.3% 37.8%
3659226 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.63 55.0 3.66e-01 100.0% 57.8%
3464744 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.62 50.0 3.70e-01 91.1% 62.6%
3729698 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.62 43.0 3.24e-01 75.0% 50.7%
3810537 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.61 51.0 3.29e-01 100.0% 39.7%
3540912 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.61 50.0 3.23e-01 100.0% 52.7%
3935235 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.61 51.0 3.27e-01 100.0% 40.0%
3622343 5.1.3.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.61 50.0 3.40e-01 98.2% 56.7%
3518602 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.61 54.0 3.78e-01 100.0% 34.4%
3905464 5.1.3.215 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40, Beta-prop_EML 0.60 49.0 3.18e-01 100.0% 52.7%
3957008 5.1.3.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.60 50.0 3.69e-01 100.0% 90.0%
3196528 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.60 42.0 4.14e-01 75.0% 81.7%
3474295 2004.5.1.3 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN 0.60 54.0 3.50e-01 100.0% 69.2%
3496000 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.60 50.0 3.10e-01 98.2% 49.2%
4126006 325.1.7.14 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RPOC_hybrid 0.59 41.0 3.98e-01 75.0% 81.5%
None 0.59 49.0 3.15e-01 100.0% 44.0%
4064214 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 42.0 4.03e-01 76.8% 78.5%
3801884 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 46.0 2.95e-01 89.3% 45.9%
3903092 5.1.4.301 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7 0.59 48.0 3.06e-01 100.0% 37.9%
3500033 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 36.0 3.79e-01 78.6% 68.0%
5046549 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 45.0 4.09e-01 87.5% 71.2%
3374847 5.1.3.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth 0.58 49.0 3.16e-01 100.0% 46.9%
4991056 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.58 42.0 4.29e-01 94.6% 80.0%
3419181 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.58 48.0 3.12e-01 98.2% 53.9%
3238793 394.1.1.0 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.58 45.0 4.70e-01 87.5% 96.0%
3819668 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.58 32.0 3.56e-01 73.2% 65.9%
3241597 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.58 48.0 3.15e-01 100.0% 41.4%
4927153 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.58 42.0 4.22e-01 94.6% 80.0%
4022544 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 47.0 2.93e-01 100.0% 41.2%
3953959 4.1.1.424 beta barrels › SH3 › SH3 › SH3 › PF29823 0.58 36.0 3.77e-01 76.8% 70.0%
3244216 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 47.0 3.01e-01 98.2% 32.9%
3818615 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.58 46.0 2.94e-01 94.6% 44.8%
4027842 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.57 48.0 3.02e-01 98.2% 39.7%
3758575 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.57 47.0 3.25e-01 100.0% 60.9%
3972934 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.57 46.0 3.85e-01 94.6% 58.1%
3829068 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.57 44.0 3.03e-01 91.1% 51.7%
4030473 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 42.0 2.65e-01 89.3% 33.8%
4014784 9.14.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.56 39.0 3.24e-01 78.6% 41.8%
3331569 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.55 36.0 3.67e-01 76.8% 69.1%
3618665 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 45.0 2.82e-01 96.4% 32.1%
3208203 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.55 33.0 3.39e-01 78.6% 60.0%
3189994 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.55 34.0 2.91e-01 78.6% 36.7%
3185751 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.55 44.0 2.70e-01 94.6% 22.5%
4013029 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 44.0 2.92e-01 100.0% 32.0%
4017732 220.1.1.202 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.54 37.0 2.92e-01 76.8% 32.0%
3280385 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.54 38.0 3.87e-01 76.8% 78.2%
3289896 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 41.0 2.40e-01 96.4% 17.0%
3673032 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 36.0 3.40e-01 71.4% 71.4%
3650304 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.51 39.0 3.88e-01 92.9% 83.3%
5045717 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.51 41.0 3.31e-01 98.2% 76.9%