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NC_029048.2__YP_009221610.1__PHICD211_20015__00025
Bact-VirNC_029048.2__YP_009221610.1__PHICD211_20015__00025
Identity
- Accession:
- NC_029048 ↗
- Kingdom:
- phage
Quality
91.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-125
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 39.0 | 4.74e-01 | 73.7% | 85.3% |
| 3kluA01 | 3.30.2220.30 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › | 0.59 | 47.0 | 4.76e-01 | 85.1% | 95.5% |
| 4wsqB00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.58 | 42.0 | 3.13e-01 | 76.3% | 58.1% |
| 2gwgA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.57 | 41.0 | 2.94e-01 | 86.8% | 25.6% |
| 2ob9A00 | 3.30.2220.20 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like | 0.53 | 41.0 | 4.20e-01 | 82.5% | 87.9% |
| 3hklA00 | 1.10.2000.10 | Mainly Alpha › Orthogonal Bundle › Frizzled cysteine-rich domain › Frizzled cysteine-rich domain | 0.50 | 36.0 | 3.37e-01 | 74.6% | 96.5% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3847592 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 41.0 | 2.73e-01 | 71.1% | 73.3% |
| 3443999 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 28.0 | 3.10e-01 | 90.4% | 58.9% |
| 3177693 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 40.0 | 2.78e-01 | 74.6% | 48.9% |
| 3225405 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.54 | 40.0 | 3.70e-01 | 75.4% | 62.1% |
| 5022439 | 304.156.1.3 ↗ | a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › DUF5402 | 0.53 | 31.0 | 3.49e-01 | 83.3% | 76.5% |
| 4053516 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.52 | 32.0 | 2.50e-01 | 88.6% | 26.8% |
| 3645166 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 37.0 | 2.88e-01 | 73.7% | 61.1% |
| 3217417 | 5001.1.1.121 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › TRAM_LAG1_CLN8 | 0.52 | 47.0 | 3.36e-01 | 100.0% | 39.7% |
| 3987094 | 4967.1.1.11 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › GIIM | 0.50 | 39.0 | 3.87e-01 | 92.1% | 78.3% |