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NC_029048.2__YP_009221679.1__PHICD211_20079__00094

Bact-Vir

NC_029048.2__YP_009221679.1__PHICD211_20079__00094

Identity

Accession:
NC_029048 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_phiCD211

TaxID: 1582152

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-89
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r31A01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.66 41.0 4.60e-01 87.1% 81.8%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 31.0 3.35e-01 83.5% 58.1%
1w78A01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.58 39.0 2.76e-01 70.6% 27.3%
3qwuA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 27.0 3.42e-01 72.9% 83.0%
1r8oB01 2.30.30.480 Mainly Beta › Roll › SH3 type barrels. › 0.55 29.0 3.20e-01 72.9% 63.6%
3qxfA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.55 49.0 3.27e-01 100.0% 34.7%
2nwhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 44.0 3.03e-01 92.9% 49.2%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.52 44.0 3.08e-01 98.8% 42.7%
3s95A02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 38.0 3.02e-01 83.5% 94.6%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 40.0 3.72e-01 89.4% 69.5%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 42.0 3.23e-01 97.6% 57.1%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3787937 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 48.0 4.37e-01 85.9% 88.5%
5023929 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 41.0 4.12e-01 92.9% 72.9%
3493489 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.55 30.0 3.81e-01 94.1% 92.0%
2841490 5.1.5.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR75_1st 0.53 36.0 3.13e-01 70.6% 53.0%
4200272 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.53 38.0 3.80e-01 77.6% 88.9%
4971091 802.1.1.1 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.53 40.0 3.49e-01 82.4% 83.7%
2800366 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.52 44.0 3.02e-01 97.6% 40.2%
4208459 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.52 33.0 3.85e-01 90.6% 93.3%
4945195 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 36.0 3.30e-01 87.1% 53.9%
5044299 3407.1.1.2 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc 0.51 40.0 3.48e-01 84.7% 56.3%
4680096 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 37.0 3.87e-01 87.1% 83.7%
3677881 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.50 45.0 3.59e-01 100.0% 70.0%
4995072 101.41.1.0 ↗ alpha arrays › HTH › MRB1590 C-terminal domain › MRB1590 C-terminal domain 0.50 34.0 3.28e-01 88.2% 60.0%