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NC_029048.2__YP_009221689.1__PHICD211_20088__00104

Bact-Vir

NC_029048.2__YP_009221689.1__PHICD211_20088__00104

Identity

Accession:
NC_029048 ↗
Kingdom:
phage

Quality

91.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_phiCD211

TaxID: 1582152

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-112
PDB
Domain cluster: rep: IMGVR_UViG_3300021509_000009-3300021509-Ga0190304_100013559__D29-130
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vl7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.73 68.0 5.80e-01 100.0% 86.5%
6jimB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 66.0 6.01e-01 100.0% 87.4%
2z0mA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 65.0 5.39e-01 100.0% 81.7%
3vkwA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 65.0 5.99e-01 100.0% 94.4%
1w36B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 65.0 4.90e-01 100.0% 92.3%
1pjrA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 64.0 5.19e-01 100.0% 87.6%
7w0bA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 64.0 5.13e-01 100.0% 85.2%
7r7jA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 63.0 5.31e-01 100.0% 84.9%
1z6aA01 3.40.50.10810 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain 0.69 64.0 5.11e-01 100.0% 89.3%
8alzB05 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 63.0 5.08e-01 100.0% 82.0%
1hv8A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 60.0 5.38e-01 99.1% 98.0%
3rc3A03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 60.0 5.27e-01 100.0% 89.3%
5fhgA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 58.0 4.76e-01 100.0% 80.3%
3jb9X01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 56.0 4.39e-01 100.0% 75.5%
3ephA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 54.0 4.08e-01 100.0% 80.1%
3a8tA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 51.0 4.43e-01 100.0% 75.3%
1lwdA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.57 52.0 3.50e-01 100.0% 46.2%
2wjwA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 48.0 4.31e-01 94.6% 93.9%
2a3nA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.57 42.0 3.78e-01 83.8% 54.7%
4wxmB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 44.0 4.18e-01 82.0% 78.3%
5t5dA00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.57 50.0 4.58e-01 100.0% 89.3%
7sglD01 3.40.50.12650 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 48.0 4.50e-01 93.7% 92.0%
3u7qB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.56 48.0 4.43e-01 93.7% 89.0%
3lfjB00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.56 50.0 4.40e-01 100.0% 84.9%
3d3qA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 50.0 4.54e-01 100.0% 83.8%
3f8tA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 47.0 3.55e-01 95.5% 85.8%
1jr2A02 3.40.50.10090 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 42.0 3.91e-01 82.0% 80.0%
2afrA00 3.40.50.10230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin biosynthesis CobH/CbiC, precorrin-8X methylmutase 0.54 47.0 3.86e-01 98.2% 74.5%
5mp7A02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 45.0 4.30e-01 93.7% 100.0%
5ereA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 45.0 4.22e-01 94.6% 97.8%
2lciA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 36.0 3.45e-01 70.3% 73.9%
4pioA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 45.0 3.93e-01 98.2% 89.0%
3kljA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 40.0 4.04e-01 81.1% 92.7%
5jciA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 39.0 3.76e-01 81.1% 90.9%
1a3cA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 3.83e-01 95.5% 80.1%
2wnsA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 42.0 3.55e-01 91.9% 95.9%
3zwfA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 44.0 3.38e-01 98.2% 95.8%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3946014 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 68.0 5.41e-01 100.0% 97.1%
2512657 2004.1.1.62 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1 0.71 66.0 5.78e-01 100.0% 78.6%
223951 2004.1.1.62 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1 0.71 65.0 5.56e-01 100.0% 77.0%
4991682 2004.1.1.144 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD_2 0.70 65.0 5.12e-01 100.0% 98.2%
3956878 2004.1.1.194 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 0.68 63.0 4.98e-01 100.0% 88.4%
3711265 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.66 60.0 5.30e-01 98.2% 96.8%
3990336 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 60.0 4.40e-01 100.0% 50.7%
3588330 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.65 60.0 5.22e-01 100.0% 90.3%
4950792 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 59.0 4.39e-01 100.0% 94.1%
5070414 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.64 58.0 4.59e-01 100.0% 73.9%
3725350 2004.1.1.232 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEXQc_Suv3 0.64 59.0 4.18e-01 100.0% 43.1%
1509146 3949.1.1.0 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain 0.59 47.0 4.79e-01 87.4% 96.4%
3892980 7510.1.1.1 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh 0.57 49.0 4.86e-01 94.6% 95.7%
3597374 7510.1.1.0 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like 0.56 48.0 4.07e-01 93.7% 95.6%
3655562 7510.1.1.1 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh 0.55 48.0 4.05e-01 94.6% 95.1%
5002824 2004.1.1.1204 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF1638 0.55 48.0 3.98e-01 100.0% 69.5%
4771694 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.53 36.0 3.45e-01 70.3% 73.9%
10446 2007.1.8.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Uroporphyrinogen III synthase (U3S, HemD) › HEM4 0.52 45.0 4.39e-01 91.9% 94.2%
4013275 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.52 43.0 4.06e-01 91.0% 100.0%
5017247 4244.1.1.5 ↗ a/b three-layered sandwiches › EreA/ChaN-like › EreA/ChaN-like › EreA/ChaN-like › TraB_PrgY_gumN 0.52 41.0 3.47e-01 86.5% 92.3%
3576673 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 44.0 3.53e-01 93.7% 95.7%
138132 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.51 40.0 3.98e-01 83.8% 90.4%
4931457 7550.1.1.0 ↗ a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain 0.51 43.0 4.33e-01 100.0% 93.6%