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NC_029048.2__YP_009221738.1__PHICD211_20135__00153
Bact-VirNC_029048.2__YP_009221738.1__PHICD211_20135__00153
Identity
- Accession:
- NC_029048 ↗
- Kingdom:
- phage
Quality
95.2
mean pLDDT
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-127
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13975.12 best | gag-asp_proteas | 44.7 | 2.20e-11 | 78.6% | 88.0% |
| PF13650.12 | Asp_protease_2 | 44.9 | 2.10e-11 | 76.2% | 88.9% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a94A00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.85 | 65.0 | 7.26e-01 | 94.4% | 100.0% |
| 1fmbA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.82 | 65.0 | 7.14e-01 | 93.7% | 100.0% |
| 3s8iA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.81 | 67.0 | 6.79e-01 | 95.2% | 87.9% |
| 4ehcA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.81 | 76.0 | 5.71e-01 | 100.0% | 51.8% |
| 5c9dB00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.78 | 67.0 | 6.90e-01 | 99.2% | 96.7% |
| 1wkrA01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.78 | 73.0 | 6.53e-01 | 100.0% | 92.9% |
| 2fivA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.76 | 64.0 | 6.79e-01 | 94.4% | 98.2% |
| 3liyA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.75 | 65.0 | 6.82e-01 | 95.2% | 100.0% |
| 1smrA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.71 | 66.0 | 6.12e-01 | 100.0% | 91.0% |
| 1miqA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.69 | 63.0 | 5.92e-01 | 100.0% | 91.4% |
| 1dpjA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.69 | 63.0 | 5.91e-01 | 100.0% | 91.6% |
| 1j71A02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.69 | 64.0 | 5.83e-01 | 100.0% | 83.2% |
| 1wlfA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.66 | 40.0 | 4.71e-01 | 82.5% | 89.3% |
| 3oloA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 31.0 | 3.28e-01 | 88.9% | 63.1% |
| 3mfxB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 32.0 | 3.32e-01 | 88.9% | 65.8% |
| 3nqzA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 29.0 | 3.38e-01 | 81.7% | 79.8% |
| 1jv2B04 | 4.10.1240.30 | Few Secondary Structures › Irregular › Hormone receptor fold › | 0.51 | 30.0 | 3.41e-01 | 79.4% | 81.4% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 33.0 | 3.38e-01 | 89.7% | 68.6% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992338 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.86 | 69.0 | 7.53e-01 | 92.9% | 100.0% |
| 5032197 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.86 | 69.0 | 7.32e-01 | 91.3% | 94.5% |
| 3970790 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.85 | 75.0 | 7.60e-01 | 100.0% | 95.2% |
| 4933116 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.85 | 70.0 | 7.37e-01 | 95.2% | 95.7% |
| 5032263 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.84 | 76.0 | 7.55e-01 | 95.2% | 96.9% |
| 3496964 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.84 | 71.0 | 7.21e-01 | 96.0% | 89.6% |
| 4993656 | 1.1.1.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP | 0.84 | 76.0 | 7.83e-01 | 96.8% | 100.0% |
| 3461051 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.84 | 72.0 | 7.28e-01 | 95.2% | 91.2% |
| 3362676 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.83 | 74.0 | 7.14e-01 | 96.8% | 84.3% |
| 4969351 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.83 | 73.0 | 7.62e-01 | 91.3% | 100.0% |
| 5030532 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.83 | 67.0 | 7.01e-01 | 91.3% | 92.2% |
| 4494100 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.83 | 75.0 | 7.51e-01 | 100.0% | 93.8% |
| 3684739 | 1.1.1.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 | 0.83 | 73.0 | 7.51e-01 | 94.4% | 97.5% |
| 5031038 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.83 | 74.0 | 7.48e-01 | 94.4% | 100.0% |
| 3449555 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.82 | 72.0 | 7.21e-01 | 93.7% | 90.6% |
| 3937611 | 1.1.1.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 | 0.82 | 68.0 | 7.31e-01 | 92.9% | 100.0% |
| 3952619 | 1.1.1.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › PE-PGRS_C | 0.82 | 77.0 | 5.75e-01 | 100.0% | 58.3% |
| 4436288 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.82 | 64.0 | 6.89e-01 | 94.4% | 93.6% |
| 3934130 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.82 | 74.0 | 7.31e-01 | 96.8% | 92.3% |
| 4928555 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.82 | 76.0 | 7.68e-01 | 100.0% | 100.0% |
| 5031162 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.82 | 69.0 | 7.27e-01 | 92.9% | 97.4% |
| 5032212 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.82 | 73.0 | 7.16e-01 | 94.4% | 94.0% |
| 3935726 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.81 | 70.0 | 7.32e-01 | 96.0% | 100.0% |
| 3923745 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.81 | 70.0 | 7.10e-01 | 95.2% | 92.0% |
| 4933012 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.81 | 70.0 | 7.23e-01 | 93.7% | 96.7% |
| 3933423 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.81 | 67.0 | 7.14e-01 | 90.5% | 100.0% |
| 3559341 | 1.1.1.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 | 0.80 | 75.0 | 7.24e-01 | 100.0% | 92.1% |
| 4993154 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.80 | 74.0 | 7.41e-01 | 98.4% | 100.0% |
| 3927612 | 1.1.1.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 | 0.80 | 69.0 | 7.23e-01 | 96.0% | 100.0% |
| 4169805 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.80 | 65.0 | 6.91e-01 | 95.2% | 97.3% |
| 3691719 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.80 | 64.0 | 6.91e-01 | 91.3% | 100.0% |
| 4955491 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.79 | 71.0 | 6.95e-01 | 94.4% | 92.6% |
| 3631178 | 1.1.1.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 | 0.79 | 71.0 | 6.89e-01 | 96.0% | 87.9% |
| 4984547 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.79 | 70.0 | 7.26e-01 | 96.8% | 100.0% |
| 3931849 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.79 | 68.0 | 6.89e-01 | 96.0% | 92.8% |
| 5028105 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.79 | 72.0 | 7.08e-01 | 99.2% | 99.3% |
| 4027119 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.78 | 73.0 | 7.13e-01 | 100.0% | 97.0% |
| 4992554 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.78 | 73.0 | 6.84e-01 | 100.0% | 98.0% |
| 5034399 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.77 | 71.0 | 7.04e-01 | 100.0% | 93.2% |
| 4932925 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.77 | 67.0 | 6.87e-01 | 91.3% | 100.0% |
| 4599597 | 1.1.2.39 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Peptidase_U4 | 0.77 | 63.0 | 6.56e-01 | 84.9% | 100.0% |
| 5031967 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.77 | 54.0 | 5.74e-01 | 75.4% | 81.8% |
| 3732052 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.77 | 63.0 | 6.66e-01 | 85.7% | 100.0% |
| 3939777 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.77 | 66.0 | 6.66e-01 | 96.8% | 92.7% |
| 3833862 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.77 | 64.0 | 6.65e-01 | 94.4% | 96.5% |
| 4992731 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.76 | 64.0 | 6.67e-01 | 92.1% | 95.7% |
| 3579423 | 1.1.1.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 | 0.75 | 67.0 | 6.35e-01 | 96.8% | 96.7% |
| 3731145 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.75 | 64.0 | 6.47e-01 | 92.9% | 92.0% |
| 3722166 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 59.0 | 6.18e-01 | 82.5% | 100.0% |
| 3509026 | 1.1.1.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 | 0.75 | 66.0 | 5.94e-01 | 95.2% | 94.7% |
| 3507687 | 1.1.1.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 | 0.71 | 65.0 | 6.45e-01 | 97.6% | 95.4% |
| 3665937 | 1.1.1.27 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N | 0.71 | 66.0 | 5.28e-01 | 100.0% | 64.2% |
| 1320102 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.71 | 65.0 | 5.93e-01 | 100.0% | 88.4% |
| 4999539 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.69 | 60.0 | 6.13e-01 | 94.4% | 98.4% |
| 3472295 | 4184.1.1.1 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 | 0.62 | 29.0 | 3.51e-01 | 97.6% | 67.5% |
| 3603051 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.60 | 49.0 | 5.15e-01 | 88.1% | 100.0% |
| 3475306 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.56 | 36.0 | 3.81e-01 | 96.0% | 72.7% |
| 5054466 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.55 | 43.0 | 4.67e-01 | 92.9% | 100.0% |
| 3508573 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 29.0 | 3.20e-01 | 75.4% | 64.8% |