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NC_029048.2__YP_009221739.1__PHICD211_20136__00154

Bact-Vir

NC_029048.2__YP_009221739.1__PHICD211_20136__00154

Identity

Accession:
NC_029048 ↗
Kingdom:
phage

Quality

84.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_phiCD211

TaxID: 1582152

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-70
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4owpB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 50.0 3.88e-01 97.1% 83.7%
2qyxA02 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.58 46.0 3.89e-01 86.8% 84.1%
4ifdI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 48.0 3.76e-01 91.2% 93.1%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 45.0 3.70e-01 95.6% 95.2%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 36.0 3.83e-01 77.9% 79.3%
1jb3A00 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 42.0 3.49e-01 85.3% 71.7%
3nswA00 2.40.50.780 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 44.0 3.72e-01 86.8% 65.1%
2b39A13 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 43.0 3.41e-01 86.8% 64.7%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.53 39.0 3.33e-01 80.9% 62.0%
1xweA01 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 41.0 3.27e-01 86.8% 58.0%
2outA01 3.40.5.80 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.52 36.0 3.92e-01 76.5% 87.7%
5jpnC02 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 41.0 3.15e-01 85.3% 51.6%
1uapA00 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 40.0 3.31e-01 86.8% 60.3%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 41.0 3.48e-01 86.8% 65.8%
3wbiA04 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 36.0 2.82e-01 73.5% 71.7%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 42.0 3.54e-01 94.1% 73.0%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.51 36.0 3.31e-01 75.0% 81.3%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3932894 2492.1.1.36 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like 0.61 50.0 3.99e-01 95.6% 93.3%
3893747 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.59 43.0 3.41e-01 77.9% 52.7%
146256 304.122.1.1 ↗ a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 0.58 46.0 3.90e-01 86.8% 84.8%
4957050 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 47.0 4.14e-01 86.8% 63.2%
3501627 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.57 48.0 3.58e-01 100.0% 61.0%
3830803 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 44.0 3.81e-01 85.3% 84.8%
3879862 10.32.1.209 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MGAT4A_C 0.56 43.0 3.40e-01 83.8% 59.3%
3469751 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.55 44.0 3.43e-01 86.8% 68.3%
3567962 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.54 43.0 3.54e-01 86.8% 62.4%
3542540 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.54 42.0 3.60e-01 86.8% 67.8%
4286148 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.54 43.0 3.34e-01 86.8% 55.3%
3841381 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.54 42.0 3.42e-01 86.8% 60.0%
4961996 11.1.1.1403 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1616 0.53 41.0 3.44e-01 85.3% 62.4%
3598121 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 41.0 3.28e-01 83.8% 75.7%
3334892 11.2.1.42 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF7651 0.53 41.0 3.09e-01 86.8% 75.0%
4927128 2.3.1.0 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like 0.53 42.0 3.74e-01 88.2% 74.0%
3891382 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.53 41.0 3.21e-01 86.8% 56.1%
3510144 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.52 42.0 3.32e-01 86.8% 65.2%
3594485 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 40.0 3.52e-01 86.8% 77.1%
3934388 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.51 40.0 3.32e-01 86.8% 64.8%
4995318 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.50 42.0 3.50e-01 92.6% 96.6%
5072315 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.50 42.0 3.45e-01 92.6% 96.7%