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NC_029048.2__YP_009221757.1__PHICD211_20154__00172

Bact-Vir

NC_029048.2__YP_009221757.1__PHICD211_20154__00172

Identity

Accession:
NC_029048 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_phiCD211

TaxID: 1582152

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-104
PDB
Domain cluster: rep: NC_028838.1__YP_009202017.1__PHICD506_20030__00030__D6-95
D2 high residues 119-200
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f3xA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 41.0 3.46e-01 75.6% 84.6%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 49.0 3.94e-01 100.0% 59.9%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.56 42.0 3.98e-01 100.0% 67.0%
2p3hA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 47.0 4.49e-01 98.8% 89.8%
5swiD01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 45.0 3.26e-01 92.7% 64.3%
3lbeB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 39.0 3.43e-01 76.8% 96.8%
1chmA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.54 47.0 3.41e-01 100.0% 85.8%
4ehoA04 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 45.0 4.05e-01 100.0% 84.7%
3k67A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 37.0 3.08e-01 74.4% 78.2%
1cjxB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 43.0 3.35e-01 100.0% 38.6%
1ysqA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 46.0 3.60e-01 100.0% 65.7%
3mr0A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 44.0 4.12e-01 100.0% 87.3%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.52 42.0 3.51e-01 90.2% 83.0%
4i5sA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 44.0 4.20e-01 100.0% 93.9%
3cloC01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 42.0 3.28e-01 92.7% 51.3%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 44.0 2.85e-01 96.3% 20.3%
3ramA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 45.0 3.16e-01 100.0% 81.6%
4f3lA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 44.0 3.92e-01 100.0% 78.7%
5byuA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 37.0 3.27e-01 79.3% 70.3%
3a2eA00 3.30.430.20 Alpha Beta › 2-Layer Sandwich › Killer Toxin P4; Chain A › Gnk2 domain, C-X8-C-X2-C motif 0.50 42.0 3.90e-01 97.6% 98.1%
3h9wA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 43.0 3.97e-01 100.0% 95.4%
2g7uC02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.50 44.0 3.48e-01 100.0% 79.8%
3lw3B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 35.0 3.02e-01 73.2% 86.1%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4497101 4312.2.1.0 ↗ a+b two layers › RelE-like › YaeB-like › YaeB-like 0.58 48.0 4.75e-01 96.3% 94.4%
4519471 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.56 43.0 4.33e-01 100.0% 79.8%
3695445 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 49.0 4.33e-01 100.0% 77.6%
4010890 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 48.0 4.07e-01 100.0% 73.1%
3971331 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.54 46.0 4.17e-01 100.0% 80.0%
3624392 3535.1.1.0 ↗ a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 0.53 45.0 3.30e-01 100.0% 32.8%
3973879 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.53 45.0 3.78e-01 100.0% 65.2%
5040729 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 45.0 4.13e-01 100.0% 75.5%
4008773 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 44.0 4.15e-01 100.0% 94.3%
3971053 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 44.0 4.08e-01 100.0% 94.5%
4930506 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 44.0 4.04e-01 100.0% 82.7%
3586908 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 43.0 4.03e-01 100.0% 84.8%
5047292 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 43.0 4.02e-01 100.0% 83.6%
4931487 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.50 43.0 3.82e-01 100.0% 74.4%
3488565 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.50 42.0 3.60e-01 100.0% 68.0%
5034774 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.50 43.0 3.81e-01 100.0% 75.2%
4026244 4135.1.1.0 ↗ beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like 0.50 43.0 3.69e-01 100.0% 58.5%