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NC_029057.1__YP_009222158.1__AXI64_gp147__00147

Bact-Vir

NC_029057.1__YP_009222158.1__AXI64_gp147__00147

Identity

Accession:
NC_029057 ↗
Kingdom:
phage

Quality

84.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_qdvp001

TaxID: 1003177

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-199
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5c0yA02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.65 33.0 4.33e-01 72.4% 88.2%
3efaA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 32.0 3.49e-01 75.9% 55.5%
2jdcA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 32.0 3.47e-01 78.8% 59.3%
3d2fA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.59 29.0 3.92e-01 70.6% 91.7%
1ad6A00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 40.0 3.96e-01 71.2% 92.4%
1f05A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 40.0 3.29e-01 73.5% 64.9%
1rjjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 26.0 3.11e-01 100.0% 65.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3701281 11.1.1.907 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BBS7_GAE 0.63 30.0 3.53e-01 75.3% 61.7%
3509042 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 4.57e-01 70.6% 93.1%
5077356 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 36.0 4.06e-01 92.4% 86.4%
3654856 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.55 34.0 4.24e-01 77.1% 100.0%
3715290 101.1.2.77 ↗ alpha arrays › HTH › HTH › winged helix domain › ESCRT-II 0.55 37.0 4.38e-01 70.0% 100.0%
4945595 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 30.0 3.59e-01 91.8% 77.4%
4029192 101.1.2.236 ↗ alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.55 38.0 2.95e-01 70.6% 74.4%
5061235 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.53 40.0 3.66e-01 98.2% 57.7%
3422911 7516.1.1.69 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_92 0.53 37.0 2.90e-01 71.2% 85.0%
3698442 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.52 39.0 3.19e-01 75.3% 95.4%
4994902 101.1.2.914 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.52 28.0 3.44e-01 92.9% 82.9%
3802489 2003.1.5.97 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_32 0.52 41.0 3.27e-01 82.9% 83.2%
3275654 2003.1.5.97 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_32 0.51 41.0 3.31e-01 84.7% 100.0%
3974815 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 42.0 3.52e-01 89.4% 98.3%
D2 high residues 349-446
PDB
Domain cluster: rep: MW824372.1__QZI86815.1__MYOV056v2_p0041__00041__D401-490