←Back to structures

NC_029058.1__YP_009222317.1__AXJ15_gp083__00079

Bact-Vir

NC_029058.1__YP_009222317.1__AXJ15_gp083__00079

Identity

Accession:
NC_029058 ↗
Kingdom:
phage

Quality

70.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Hopescreekvirus› Lactobacillus_phage_LfeInf

TaxID: 1567484

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-135
PDB
D2 high residues 444-533
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4im0A04 1.20.1270.420 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.84 77.0 5.58e-01 100.0% 83.2%
2ot4A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.81 74.0 6.99e-01 100.0% 91.6%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.79 64.0 6.68e-01 95.6% 96.3%
4wjg400 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.78 71.0 5.04e-01 100.0% 82.0%
2wyhB04 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.78 69.0 6.66e-01 97.8% 94.1%
3o6xA02 1.20.120.1560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.76 69.0 5.83e-01 100.0% 85.8%
4e40A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.76 67.0 4.92e-01 100.0% 84.1%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.75 67.0 6.64e-01 95.6% 94.6%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.75 41.0 4.47e-01 92.2% 64.9%
2qupA00 1.20.120.490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain 0.70 58.0 5.26e-01 88.9% 69.7%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.70 56.0 5.88e-01 94.4% 98.8%
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 59.0 6.02e-01 97.8% 97.7%
2d4uB00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.67 60.0 5.04e-01 100.0% 71.6%
7smtA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.65 49.0 3.97e-01 80.0% 86.8%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.64 56.0 5.34e-01 97.8% 84.3%
2cdqA02 1.20.120.1320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain 0.64 55.0 5.37e-01 100.0% 88.7%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.64 50.0 5.35e-01 98.9% 100.0%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 49.0 4.67e-01 86.7% 85.5%
3ieeA02 1.20.58.820 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Uncharacterised protein PF12889, C-terminal DUF3829 0.62 47.0 4.57e-01 81.1% 78.6%
4nv0A02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.62 43.0 4.48e-01 82.2% 79.3%
1zoyD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.61 41.0 3.94e-01 70.0% 60.8%
6k9pB02 1.20.1300.20 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 0.61 52.0 4.49e-01 98.9% 63.2%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.60 52.0 4.77e-01 100.0% 72.8%
5dqqA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.60 49.0 4.41e-01 91.1% 63.3%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.60 49.0 4.57e-01 94.4% 69.7%
1sg6A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.60 49.0 3.89e-01 92.2% 92.9%
1f1eA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.60 46.0 3.90e-01 82.2% 85.4%
1td6A03 1.10.472.40 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 0.60 38.0 3.87e-01 83.3% 64.1%
3mvpA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 43.0 3.71e-01 77.8% 72.5%
4iv6B01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.58 40.0 3.71e-01 74.4% 54.3%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.57 45.0 4.42e-01 86.7% 79.6%
4zqeA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.57 46.0 4.51e-01 85.6% 82.3%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 38.0 4.00e-01 71.1% 75.6%
1onfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 41.0 3.13e-01 75.6% 47.5%
2b3tA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 39.0 4.06e-01 84.4% 78.6%
3ic9A02 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.56 36.0 3.99e-01 75.6% 84.3%
3vouB00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 39.0 3.39e-01 100.0% 47.8%
3a7mA01 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.55 47.0 4.39e-01 92.2% 76.4%
4cgkA01 6.10.250.3150 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 48.0 3.66e-01 97.8% 94.4%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 41.0 3.63e-01 83.3% 76.9%
1h3lB00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.53 37.0 3.98e-01 86.7% 87.2%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 41.0 4.04e-01 91.1% 81.2%
3tuiD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 35.0 2.71e-01 72.2% 69.4%
2aplA02 1.10.8.340 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.50 40.0 4.19e-01 91.1% 97.5%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5058630 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.83 58.0 6.73e-01 86.7% 100.0%
3407685 5038.2.1.1 ↗ alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG 0.80 72.0 6.26e-01 98.9% 65.9%
3394093 5038.2.1.1 ↗ alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG 0.79 72.0 5.89e-01 98.9% 55.6%
4988178 633.29.1.0 ↗ alpha bundles › Bromodomain-like › Putative uncharacterized protein PAV1-137 › Putative uncharacterized protein PAV1-137 0.79 64.0 6.32e-01 94.4% 82.1%
3610419 1189.1.1.0 ↗ alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor 0.79 72.0 5.22e-01 100.0% 87.9%
3286379 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.78 66.0 5.86e-01 98.9% 65.6%
4352674 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.77 69.0 6.55e-01 97.8% 86.7%
3634546 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.77 60.0 6.44e-01 91.1% 100.0%
5045176 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.77 70.0 6.69e-01 100.0% 94.2%
3704193 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.76 69.0 4.97e-01 98.9% 75.9%
3772121 632.7.1.19 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › MYO6_lever 0.76 68.0 6.82e-01 97.8% 97.8%
3543713 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 52.0 5.21e-01 70.0% 91.1%
3523206 3826.1.1.20 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › MYO6_lever 0.75 68.0 6.38e-01 100.0% 81.8%
3340509 611.8.1.5 ↗ alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › RPW8 0.75 57.0 5.42e-01 80.0% 77.1%
4049927 4044.1.1.1 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.73 66.0 6.52e-01 100.0% 93.7%
4525539 5069.1.1.88 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Bombinin 0.72 64.0 5.84e-01 98.9% 74.2%
320075 632.6.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Epsilon_antitox 0.72 64.0 6.33e-01 98.9% 91.6%
4025391 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.71 60.0 6.16e-01 98.9% 98.8%
165282 601.29.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › TM1646-like › TM1646-like › DUF327 0.70 58.0 5.26e-01 88.9% 69.7%
3933812 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.70 54.0 4.13e-01 84.4% 90.7%
3212004 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.70 61.0 5.01e-01 98.9% 67.6%
3272278 3722.1.1.0 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain 0.68 61.0 4.31e-01 100.0% 48.2%
3224713 207.1.1.20 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_4 0.65 58.0 3.50e-01 97.8% 17.9%
4927047 632.19.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.62 48.0 5.14e-01 85.6% 100.0%
3234179 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.61 39.0 4.25e-01 80.0% 78.7%
5072939 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.61 52.0 3.51e-01 97.8% 61.9%
3636049 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.57 50.0 4.08e-01 100.0% 82.8%
3912535 603.2.1.1 ↗ alpha bundles › STAT-like › STAT › STAT › STAT_alpha 0.57 52.0 3.97e-01 98.9% 60.0%
4024271 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.56 49.0 4.32e-01 98.9% 97.8%
4159969 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.55 38.0 3.62e-01 88.9% 61.0%
3975328 3718.1.1.1 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT 0.53 46.0 4.80e-01 94.4% 100.0%
3372157 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.52 40.0 4.16e-01 90.0% 88.2%
4970972 604.5.1.83 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › NfeD_membrane 0.51 41.0 4.37e-01 93.3% 100.0%
D3 high residues 535-595
PDB
Domain cluster: rep: S2_012_000_R2_scaffold_18_prodigal-single.1__X__X__00136__D19-78
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6upsA01 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.71 61.0 4.58e-01 98.4% 87.7%
3q41B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 56.0 4.07e-01 95.1% 89.8%
3hutA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 51.0 3.85e-01 83.6% 94.7%
1a79A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.66 47.0 4.00e-01 75.4% 67.0%
3mvgA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.66 51.0 3.81e-01 86.9% 87.1%
1r0vA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.65 46.0 4.33e-01 75.4% 64.9%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.64 47.0 4.11e-01 75.4% 63.7%
2wjwA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 53.0 3.94e-01 93.4% 96.9%
3ktzA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.63 51.0 3.83e-01 93.4% 88.1%
2crhA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 53.0 4.51e-01 95.1% 85.3%
2gjwC01 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.62 44.0 3.43e-01 75.4% 36.4%
4nqrA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 48.0 3.64e-01 86.9% 97.4%
5h8yD02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.61 50.0 3.54e-01 93.4% 93.6%
3mxlA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.60 43.0 3.62e-01 75.4% 97.1%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.60 46.0 4.06e-01 83.6% 100.0%
5n6lA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.60 49.0 3.34e-01 100.0% 58.4%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 48.0 4.19e-01 91.8% 87.6%
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.59 45.0 3.44e-01 85.2% 61.8%
1bwzA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.59 47.0 3.86e-01 93.4% 78.0%
1s7jA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 48.0 3.90e-01 98.4% 83.3%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.58 41.0 3.27e-01 93.4% 35.7%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 47.0 3.63e-01 98.4% 87.8%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 42.0 3.64e-01 93.4% 52.7%
2i2lA01 2.10.70.50 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.56 41.0 4.37e-01 91.8% 90.4%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 43.0 2.81e-01 88.5% 83.9%
3cr8A01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.56 43.0 3.32e-01 85.2% 74.5%
1zj8A03 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.55 45.0 3.46e-01 98.4% 86.1%
1am2A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.54 37.0 2.71e-01 72.1% 87.8%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 42.0 2.69e-01 91.8% 62.8%
2bbuA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 44.0 3.44e-01 100.0% 43.6%
2rfiB00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.54 38.0 2.64e-01 78.7% 60.3%
4b9wA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 37.0 3.13e-01 72.1% 88.0%
2zbvC02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.53 43.0 3.72e-01 96.7% 55.9%
3wknF00 6.20.50.120 Special › Other non-globular › N-terminal domain of TfIIb › 0.53 35.0 3.87e-01 91.8% 89.1%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 43.0 3.33e-01 100.0% 42.3%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.52 38.0 3.49e-01 83.6% 65.9%
2cw5A02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.52 39.0 3.55e-01 93.4% 58.4%
4qszA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 36.0 2.32e-01 75.4% 47.2%
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.51 37.0 3.21e-01 88.5% 48.5%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 40.0 3.42e-01 100.0% 77.0%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3455892 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.69 56.0 3.85e-01 88.5% 85.7%
None — 0.68 56.0 3.94e-01 91.8% 62.6%
4631652 4126.1.1.6 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA 0.68 54.0 3.60e-01 86.9% 61.4%
3394097 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.67 47.0 4.02e-01 75.4% 81.0%
3402339 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.66 53.0 3.83e-01 90.2% 91.9%
5038175 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.66 47.0 4.32e-01 75.4% 65.0%
3279804 3585.1.1.1 ↗ a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA_pol_IIIA_C 0.66 46.0 4.33e-01 73.8% 72.0%
5076226 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.65 52.0 4.02e-01 90.2% 81.2%
3166885 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 50.0 3.05e-01 82.0% 45.2%
4955882 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.64 51.0 4.07e-01 90.2% 80.0%
4992920 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.64 48.0 3.25e-01 82.0% 86.5%
4977580 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.64 52.0 3.35e-01 95.1% 55.8%
3280061 2008.1.1.20 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.62 48.0 3.59e-01 88.5% 54.9%
3910972 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.62 45.0 4.58e-01 77.0% 85.0%
4681723 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.62 46.0 4.06e-01 82.0% 100.0%
3801304 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.61 50.0 3.88e-01 91.8% 63.6%
3509350 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.61 51.0 3.98e-01 93.4% 58.2%
5045717 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.61 50.0 4.11e-01 100.0% 96.2%
4390149 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.60 51.0 3.55e-01 100.0% 55.5%
3551723 223.2.1.4 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.60 42.0 3.18e-01 75.4% 50.6%
3230503 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 43.0 3.05e-01 77.0% 99.5%
3438472 219.1.1.23 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.59 53.0 3.56e-01 100.0% 36.9%
3943354 2007.1.2.10 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_3 0.58 40.0 3.10e-01 72.1% 95.9%
4182115 2484.1.1.55 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.58 47.0 3.54e-01 91.8% 74.4%
5072279 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.58 46.0 2.78e-01 91.8% 13.3%
4029890 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 42.0 2.74e-01 80.3% 91.9%
3518153 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.58 49.0 4.08e-01 95.1% 54.5%
3677315 2003.1.6.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like 0.58 44.0 3.11e-01 83.6% 32.0%
4328178 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.57 45.0 4.53e-01 86.9% 95.0%
5021430 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.56 39.0 2.90e-01 77.0% 36.6%
3639514 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.56 46.0 2.79e-01 93.4% 68.7%
4889754 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.56 33.0 3.33e-01 78.7% 58.3%
3502668 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 3.85e-01 73.8% 75.4%
4968047 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 39.0 3.33e-01 90.2% 44.8%
3730937 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.54 37.0 2.68e-01 72.1% 31.5%
3422058 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.54 42.0 2.89e-01 90.2% 58.1%
3459886 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.54 46.0 3.08e-01 96.7% 80.7%
5014198 5.1.4.670 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29948 0.53 40.0 2.59e-01 86.9% 94.5%
3877482 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 41.0 3.62e-01 88.5% 100.0%
3914305 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.53 45.0 3.15e-01 100.0% 96.3%
3922387 260.1.1.1 ↗ a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin 0.52 44.0 2.53e-01 91.8% 14.9%
4989686 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.52 43.0 3.07e-01 91.8% 88.6%
3239261 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 44.0 2.76e-01 100.0% 54.6%
4203412 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 41.0 3.09e-01 86.9% 54.0%
3206214 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.52 43.0 3.06e-01 98.4% 91.2%
3708810 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 41.0 2.61e-01 98.4% 36.6%
3708672 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.51 33.0 3.07e-01 83.6% 48.2%
3655593 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.51 43.0 2.97e-01 96.7% 89.1%
3812257 2003.1.6.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like 0.51 38.0 2.82e-01 82.0% 34.4%
3610398 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 33.0 3.17e-01 83.6% 54.7%
3596701 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.51 33.0 3.09e-01 83.6% 51.2%
3282977 300.1.1.12 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DUF5753 0.50 36.0 2.63e-01 77.0% 85.2%
3655199 275.1.1.1 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.50 41.0 3.35e-01 90.2% 76.5%
D4 medium residues 596-663
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hrvA00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.65 49.0 3.97e-01 83.8% 95.7%
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.61 46.0 4.39e-01 80.9% 100.0%
1g19A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 45.0 3.19e-01 80.9% 81.7%
3lkbA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 49.0 3.66e-01 91.2% 51.5%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.58 49.0 4.20e-01 94.1% 85.3%
3wuyA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.58 46.0 3.14e-01 92.6% 47.0%
1dl5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 46.0 3.45e-01 95.6% 51.7%
2odhA01 3.40.210.20 Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › MvaI/BcnI restriction endonuclease, catalytic domain 0.56 42.0 3.50e-01 82.4% 58.5%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 3.04e-01 100.0% 58.6%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.55 32.0 3.69e-01 85.3% 86.4%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 42.0 3.28e-01 85.3% 70.2%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 44.0 2.94e-01 94.1% 60.2%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 41.0 2.70e-01 88.2% 48.4%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 43.0 2.88e-01 100.0% 44.7%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.52 43.0 2.94e-01 100.0% 54.7%
6p2lA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.82e-01 100.0% 65.7%
5khaB01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.51 41.0 2.90e-01 94.1% 39.6%
1v5uA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 34.0 2.93e-01 88.2% 40.2%
2g9iA01 3.30.1330.100 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › CofE-like 0.51 39.0 3.21e-01 88.2% 57.6%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.50 31.0 3.06e-01 80.9% 57.7%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 29.0 2.95e-01 70.6% 54.3%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4930535 2011.1.1.18 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › AstE_AspA_cat 0.68 51.0 3.51e-01 80.9% 84.7%
4026542 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.60 46.0 3.28e-01 88.2% 62.8%
4972214 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 44.0 2.72e-01 82.4% 22.1%
5047049 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.59 40.0 2.34e-01 77.9% 7.9%
5003963 5.1.11.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.59 51.0 3.18e-01 100.0% 52.5%
3505477 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.58 46.0 3.39e-01 89.7% 48.0%
3932499 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.58 39.0 2.49e-01 70.6% 14.3%
3457412 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.58 50.0 3.41e-01 100.0% 75.6%
3668779 2492.1.1.26 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like 0.57 48.0 3.62e-01 100.0% 44.7%
3829068 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.57 45.0 3.14e-01 86.8% 37.8%
3322492 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.56 48.0 3.23e-01 100.0% 75.3%
5028870 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.56 38.0 3.82e-01 72.1% 68.6%
3342566 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.55 46.0 3.10e-01 100.0% 67.3%
3729438 2003.1.1.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ApbA 0.55 46.0 3.16e-01 95.6% 59.2%
4961561 7515.1.1.6 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest 0.55 40.0 2.55e-01 83.8% 93.3%
3944872 7503.1.1.10 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CadC_C1 0.54 42.0 3.40e-01 85.3% 80.0%
3956383 2003.1.5.378 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF2332 0.54 44.0 3.13e-01 94.1% 65.0%
3323788 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.54 47.0 3.10e-01 100.0% 59.3%
4938373 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.54 44.0 3.21e-01 100.0% 51.9%
4993757 247.1.1.11 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.53 39.0 2.75e-01 83.8% 68.1%
3586856 2004.1.1.514 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B 0.52 36.0 2.26e-01 72.1% 20.3%
None — 0.52 44.0 3.07e-01 100.0% 54.7%
3386772 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.52 41.0 2.94e-01 94.1% 38.8%
3400196 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.52 42.0 2.69e-01 92.6% 79.7%
3741555 4969.1.1.0 ↗ alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.52 37.0 2.64e-01 76.5% 83.9%
3260045 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 37.0 3.59e-01 75.0% 68.0%
5052205 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 41.0 2.39e-01 85.3% 14.8%
5017692 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 37.0 3.38e-01 75.0% 58.9%
3902978 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.52 44.0 2.94e-01 100.0% 60.6%
3614906 4.26.1.8 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 0.51 38.0 3.77e-01 79.4% 95.7%
3431863 5.1.5.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF295 0.51 42.0 2.87e-01 97.1% 55.2%
3710240 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.50 42.0 2.79e-01 98.5% 57.6%
3479744 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 42.0 2.72e-01 98.5% 38.9%
119245 252.3.1.1 ↗ a+b two layers › DNA-binding domain › Uncharacterized protein yaiA › Uncharacterized protein yaiA › YaiA 0.50 31.0 3.06e-01 80.9% 57.7%
3785319 9.14.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.50 37.0 3.45e-01 82.4% 62.4%
2770114 5.1.4.301 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7 0.50 41.0 2.73e-01 95.6% 56.8%
D5 medium residues 776-861
PDB
Domain cluster: rep: NC_047925.1__YP_009798321.1__HOS79_gp108__00101__D429-510