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NC_029061.1__YP_009222554.1__AXJ08_gp04__00004
Bact-VirNC_029061.1__YP_009222554.1__AXJ08_gp04__00004
Identity
- Accession:
- NC_029061 ↗
- Kingdom:
- phage
Quality
70.8
mean pLDDT
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 233-293
D2
medium
residues 13-162
Domain cluster:
rep: LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00232__D12-141
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 25.0 | 3.88e-01 | 79.3% | 77.8% |
| 2jrtA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 31.0 | 3.96e-01 | 84.0% | 72.1% |
| 5fgmA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 26.0 | 3.89e-01 | 84.0% | 86.2% |
| 3hugA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 25.0 | 3.37e-01 | 82.7% | 67.5% |
| 2a6cA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 22.0 | 3.04e-01 | 87.3% | 60.5% |
| 2w7nA00 | 1.10.10.2690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 25.0 | 3.11e-01 | 84.0% | 62.8% |
| 2mqkA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 21.0 | 3.12e-01 | 89.3% | 75.4% |
| 1k20A01 | 3.90.1640.10 | Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › inorganic pyrophosphatase (n-terminal core) | 0.54 | 42.0 | 3.96e-01 | 83.3% | 94.7% |
| 2bh1X00 | 3.30.300.160 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Type II secretion system, protein E, N-terminal domain | 0.54 | 21.0 | 3.00e-01 | 71.3% | 75.0% |
| 6ll8A01 | 3.90.1640.10 | Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › inorganic pyrophosphatase (n-terminal core) | 0.54 | 43.0 | 4.01e-01 | 84.7% | 96.8% |
| 4pu7A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 20.0 | 2.88e-01 | 90.7% | 70.4% |
| 4qicC01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.51 | 38.0 | 4.10e-01 | 99.3% | 91.2% |
| 1hzfA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.50 | 40.0 | 3.22e-01 | 85.3% | 85.8% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4489802 | 101.1.1.251 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB | 0.68 | 31.0 | 4.66e-01 | 98.0% | 100.0% |
| 4944726 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 25.0 | 4.09e-01 | 82.7% | 90.0% |
| 5023952 | 101.1.2.888 ↗ | alpha arrays › HTH › HTH › winged helix domain › Sigma70_r4_2 | 0.66 | 28.0 | 4.02e-01 | 84.0% | 84.3% |
| 3256356 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 28.0 | 4.21e-01 | 84.0% | 93.8% |
| 4081576 | 101.1.6.1 ↗ | alpha arrays › HTH › HTH › TrpR › Trp_repressor | 0.63 | 29.0 | 3.58e-01 | 78.0% | 68.4% |
| 4529157 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.59 | 33.0 | 4.16e-01 | 88.0% | 90.0% |
| 4989143 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 34.0 | 3.92e-01 | 96.0% | 80.9% |
| 3512259 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.56 | 34.0 | 3.97e-01 | 88.0% | 85.7% |
| 5027752 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 25.0 | 3.45e-01 | 82.0% | 82.5% |
| 3928405 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 35.0 | 4.06e-01 | 88.7% | 90.5% |
| 5042483 | 101.1.6.38 ↗ | alpha arrays › HTH › HTH › TrpR › Sigma70_r4 | 0.55 | 32.0 | 3.75e-01 | 98.0% | 80.0% |
| 5007495 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.53 | 33.0 | 3.59e-01 | 98.0% | 73.6% |
| 3998880 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 31.0 | 3.89e-01 | 99.3% | 94.7% |
| 4039156 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.52 | 31.0 | 3.58e-01 | 88.7% | 80.9% |
| 3448782 | 101.1.1.267 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26138 | 0.52 | 30.0 | 3.63e-01 | 80.7% | 86.0% |
| 3314861 | 101.1.1.267 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26138 | 0.51 | 29.0 | 3.30e-01 | 80.7% | 70.8% |
| 3916395 | 101.1.1.129 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 | 0.51 | 29.0 | 3.45e-01 | 80.7% | 80.0% |
| 3671163 | 101.1.1.267 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26138 | 0.51 | 30.0 | 3.43e-01 | 80.7% | 78.2% |
| 4994233 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.51 | 26.0 | 3.48e-01 | 72.7% | 92.5% |
| 3892817 | 101.1.1.129 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 | 0.50 | 29.0 | 3.70e-01 | 83.3% | 96.7% |