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NC_029065.1__YP_009222632.1__VCM_00034__00034

Bact-Vir

NC_029065.1__YP_009222632.1__VCM_00034__00034

Identity

Accession:
NC_029065 ↗
Kingdom:
phage

Quality

86.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vandenendeviridae› Kremarvirus› Pseudomonas_phage_VCM

TaxID: 1729937

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-94
PDB
Domain cluster: rep: LacPavin_0818_WC45_scaffold_160996_curated_closed_complete_prodigal-single.1__X__X__00767__D222-304
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.73 50.0 5.24e-01 71.0% 84.9%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 40.0 4.50e-01 71.0% 70.8%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 41.0 4.55e-01 71.0% 73.2%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 45.0 5.32e-01 74.2% 92.4%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 36.0 4.29e-01 72.0% 75.8%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.59 35.0 4.07e-01 73.1% 84.8%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.56 40.0 4.41e-01 79.6% 89.6%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.56 35.0 3.71e-01 75.3% 72.7%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 30.0 3.62e-01 73.1% 81.0%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.55 38.0 3.35e-01 71.0% 94.6%
3h0gH00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 3.54e-01 74.2% 91.9%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 32.0 3.63e-01 73.1% 77.5%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.51 35.0 3.08e-01 73.1% 58.7%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5026824 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 42.0 4.79e-01 71.0% 72.9%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.75 42.0 4.99e-01 71.0% 81.2%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 42.0 4.87e-01 72.0% 80.0%
5022848 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 42.0 5.08e-01 71.0% 88.3%
3725260 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 45.0 5.16e-01 71.0% 84.3%
3660964 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.72 41.0 4.03e-01 71.0% 52.0%
4888987 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.71 41.0 4.61e-01 71.0% 75.4%
3698762 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.71 40.0 3.94e-01 71.0% 50.5%
3597255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 40.0 4.23e-01 71.0% 61.2%
3995431 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 49.0 5.39e-01 73.1% 90.7%
3707023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 48.0 4.70e-01 72.0% 80.0%
4505316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 38.0 4.51e-01 71.0% 83.3%
4376886 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.68 46.0 4.94e-01 71.0% 87.5%
4099964 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.63 32.0 3.80e-01 72.0% 70.8%
4034031 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.61 39.0 4.58e-01 72.0% 93.8%
3698280 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 53.0 5.19e-01 94.6% 99.0%
4595815 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.60 32.0 3.71e-01 73.1% 72.3%
4625348 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.60 32.0 3.80e-01 71.0% 78.3%
3696171 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 33.0 2.18e-01 74.2% 12.5%
3518475 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 32.0 3.52e-01 72.0% 64.3%
5048974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 38.0 3.59e-01 71.0% 56.4%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.57 36.0 4.07e-01 74.2% 89.2%
3636251 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.57 43.0 3.90e-01 78.5% 82.5%
4119875 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 30.0 3.55e-01 74.2% 75.4%
4435672 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 30.0 3.51e-01 74.2% 75.4%
4107506 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 30.0 3.42e-01 71.0% 73.8%
4456732 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 31.0 3.27e-01 71.0% 61.3%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 42.0 4.23e-01 82.8% 92.6%
3263647 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 38.0 3.51e-01 73.1% 81.7%
3797642 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 3.40e-01 86.0% 55.1%
4183857 325.1.7.30 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Peptidase_M23 0.53 29.0 3.20e-01 71.0% 64.0%
3721745 2003.1.3.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Lys_Orn_oxgnase 0.53 36.0 2.34e-01 71.0% 41.6%
4127839 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 28.0 3.10e-01 75.3% 64.0%
3673266 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 38.0 3.92e-01 78.5% 92.9%
3237980 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 37.0 2.28e-01 77.4% 59.7%