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NC_029067.1__YP_009222859.1__VPLG_00010__00010

Bact-Vir

NC_029067.1__YP_009222859.1__VPLG_00010__00010

Identity

Accession:
NC_029067 ↗
Kingdom:
phage

Quality

84.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_eugene_12A10

TaxID: 573172

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-84
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7mh2A01 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.63 45.0 4.33e-01 75.3% 95.7%
7nz1G01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.62 46.0 4.35e-01 77.8% 83.3%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.62 45.0 4.28e-01 76.5% 67.7%
1g8kA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.62 45.0 3.77e-01 76.5% 60.0%
1dmrA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.62 45.0 3.54e-01 76.5% 49.7%
1q16A13 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.61 44.0 3.60e-01 76.5% 54.0%
4ga6A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.60 44.0 4.39e-01 77.8% 79.5%
1wlfA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.60 43.0 4.31e-01 76.5% 75.0%
2iv2X04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.59 43.0 4.01e-01 76.5% 82.8%
1cr5A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.58 40.0 4.16e-01 76.5% 76.6%
2ki8A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.57 43.0 3.75e-01 80.2% 88.8%
3dktA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.57 41.0 3.89e-01 75.3% 88.4%
4a5pB01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.56 40.0 3.45e-01 74.1% 97.6%
3obyA03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.56 40.0 3.75e-01 74.1% 76.8%
2napA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.56 42.0 3.78e-01 80.2% 73.7%
7eu1A01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.56 45.0 3.71e-01 86.4% 90.8%
2e7zA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.55 43.0 3.45e-01 85.2% 53.4%
1qcsA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.53 38.0 3.88e-01 76.5% 78.0%
5i3sC02 3.40.190.80 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.53 36.0 3.14e-01 71.6% 81.8%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024752 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 49.0 4.56e-01 76.5% 66.0%
4203264 1.1.2.26 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 0.67 48.0 4.56e-01 75.3% 80.0%
4116299 1.1.2.26 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 0.66 48.0 4.56e-01 75.3% 78.9%
4939451 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.65 46.0 4.47e-01 72.8% 88.6%
4241168 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.65 48.0 4.83e-01 76.5% 83.7%
4415829 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 47.0 4.40e-01 76.5% 84.0%
5053174 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 47.0 4.54e-01 76.5% 72.2%
5076635 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 46.0 4.52e-01 74.1% 77.6%
4200720 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 46.0 4.59e-01 76.5% 80.0%
5045002 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.63 46.0 4.45e-01 76.5% 73.3%
4991006 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.63 46.0 4.56e-01 76.5% 75.3%
4487888 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.63 45.0 4.28e-01 75.3% 84.2%
5043151 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.63 45.0 4.62e-01 76.5% 82.5%
4977837 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.62 45.0 4.47e-01 76.5% 77.6%
5000887 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.60 44.0 3.75e-01 76.5% 62.3%
4936180 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.60 45.0 4.00e-01 80.2% 90.7%
4281331 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.59 45.0 3.57e-01 80.2% 63.7%
3412967 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.58 42.0 4.09e-01 76.5% 78.9%
3193673 1.1.2.34 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_N 0.58 49.0 3.93e-01 92.6% 86.8%
4934824 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.58 42.0 4.19e-01 77.8% 75.3%
3285042 315.3.1.1 ↗ a+b two layers › Tautomerase/MIF-like › Vesiculogenesis and immune response regulator C-terminal domain › Vesiculogenesis and immune response regulator C-terminal domain › LytR_C 0.57 43.0 4.13e-01 80.2% 91.6%
4989928 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.57 41.0 3.65e-01 76.5% 67.5%
3724349 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.56 41.0 3.44e-01 77.8% 67.1%
3740727 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.56 41.0 4.06e-01 77.8% 84.7%
4938597 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.55 43.0 3.81e-01 85.2% 95.8%