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NC_029067.1__YP_009222973.1__VPLG_00124__00124

Bact-Vir

NC_029067.1__YP_009222973.1__VPLG_00124__00124

Identity

Accession:
NC_029067 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_eugene_12A10

TaxID: 573172

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-113
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00086__D1-125
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rf5A00 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.75 70.0 5.61e-01 100.0% 61.4%
7ri3D01 3.90.175.10 Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 0.74 69.0 5.61e-01 100.0% 86.4%
1gs0A02 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.74 68.0 5.43e-01 100.0% 71.6%
6tl1B01 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.66 61.0 5.00e-01 100.0% 66.3%
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.60 38.0 3.90e-01 100.0% 65.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3905755 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.79 74.0 7.01e-01 99.1% 98.5%
3973736 237.1.1.11 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RES 0.79 72.0 5.91e-01 100.0% 78.5%
3896918 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.76 71.0 5.34e-01 100.0% 64.3%
3483050 237.1.1.18 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF3715 0.76 70.0 5.45e-01 100.0% 66.5%
3908660 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.76 71.0 6.36e-01 100.0% 80.7%
3470627 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.75 70.0 5.31e-01 100.0% 63.3%
3241341 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.74 69.0 5.59e-01 100.0% 72.4%
3798872 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.74 69.0 5.33e-01 100.0% 66.1%
3378730 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.71 67.0 5.26e-01 100.0% 57.0%
3466858 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.71 62.0 5.12e-01 100.0% 54.4%
3657703 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.70 66.0 5.11e-01 100.0% 63.7%
3701032 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.70 59.0 5.22e-01 100.0% 64.5%
3597511 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.68 62.0 5.13e-01 100.0% 68.7%
4029680 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.63 57.0 4.88e-01 100.0% 67.4%
3631884 237.1.1.36 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF7587 0.61 56.0 4.98e-01 100.0% 99.4%
4031100 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.56 30.0 3.55e-01 71.4% 78.6%
4997535 3688.1.1.1 ↗ a+b two layers › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › UbiD_N 0.53 33.0 3.67e-01 92.9% 81.2%
4976459 3688.1.1.1 ↗ a+b two layers › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › UbiD_N 0.53 33.0 3.65e-01 92.9% 78.9%
5065085 3688.1.1.1 ↗ a+b two layers › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › UbiD_N 0.52 31.0 3.47e-01 91.1% 76.5%
4463104 1.1.5.11 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › UbiD 0.52 46.0 3.71e-01 100.0% 53.3%
4071452 1.1.5.11 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › UbiD 0.51 44.0 3.68e-01 99.1% 55.7%