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NC_029067.1__YP_009223013.1__VPLG_00164__00164

Bact-Vir

NC_029067.1__YP_009223013.1__VPLG_00164__00164

Identity

Accession:
NC_029067 ↗
Kingdom:
phage

Quality

67.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 68-111
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hulA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.69 57.0 4.39e-01 97.7% 64.8%
1f32A02 3.30.1120.50 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Pepsin inhibitor-3 0.62 45.0 4.12e-01 100.0% 58.3%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.60 45.0 3.52e-01 90.9% 44.8%
3hl1A02 6.10.140.1530 Special › Helix non-globular › Helix Hairpins › 0.59 42.0 3.82e-01 100.0% 53.8%
2optA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 46.0 3.39e-01 97.7% 33.3%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3482082 3476.1.1.0 alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain 0.65 52.0 4.68e-01 100.0% 68.6%
3533348 3476.1.1.0 alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain 0.62 50.0 4.40e-01 100.0% 64.0%
4206912 2004.1.1.71 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT 0.62 44.0 2.77e-01 100.0% 14.3%
3341266 192.19.1.0 alpha bundles › Long alpha-hairpin › YnzC-like › YnzC-like 0.58 40.0 4.29e-01 86.4% 94.3%
D2 medium residues 1-60
PDB