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NC_029067.1__YP_009223068.1__VPLG_00219__00219

Bact-Vir

NC_029067.1__YP_009223068.1__VPLG_00219__00219

Identity

Accession:
NC_029067 ↗
Kingdom:
phage

Quality

97.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-62
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 48.0 5.14e-01 96.7% 97.9%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 51.0 3.14e-01 83.6% 25.5%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.65 44.0 3.27e-01 70.5% 66.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.32e-01 100.0% 65.2%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 53.0 5.18e-01 100.0% 86.4%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 44.0 4.78e-01 98.4% 93.8%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.63 41.0 3.88e-01 73.8% 54.8%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 49.0 4.43e-01 98.4% 62.8%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 51.0 5.14e-01 100.0% 95.0%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 47.0 3.46e-01 83.6% 65.1%
3gvpA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 42.0 3.16e-01 72.1% 42.1%
7zoiA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 51.0 4.21e-01 98.4% 100.0%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 49.0 4.37e-01 93.4% 93.2%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 5.11e-01 100.0% 100.0%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.58 44.0 4.15e-01 83.6% 98.7%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.58 46.0 4.57e-01 100.0% 81.8%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 43.0 3.52e-01 83.6% 85.5%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.83e-01 75.4% 98.6%
5twbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 41.0 2.88e-01 78.7% 84.2%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.17e-01 100.0% 67.9%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.57 43.0 3.48e-01 83.6% 78.9%
5iqaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 42.0 3.77e-01 82.0% 95.6%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.83e-01 91.8% 27.9%
2b5lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 41.0 2.60e-01 83.6% 34.0%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.10e-01 100.0% 73.2%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.55 46.0 3.35e-01 100.0% 83.6%
3bb7A01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.55 45.0 3.33e-01 100.0% 33.3%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 46.0 4.43e-01 98.4% 87.1%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 4.35e-01 90.2% 98.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.88e-01 100.0% 67.5%
2xzmR01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 40.0 2.59e-01 83.6% 24.5%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.54 43.0 3.81e-01 93.4% 89.7%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.84e-01 83.6% 72.6%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 39.0 3.57e-01 83.6% 91.0%
4o2wD00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.52 43.0 2.77e-01 100.0% 100.0%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 4.00e-01 100.0% 80.5%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 35.0 3.36e-01 75.4% 58.9%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 32.0 3.13e-01 80.3% 52.2%
2wtzA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 41.0 2.83e-01 90.2% 90.2%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.52 42.0 3.60e-01 95.1% 65.7%
6ixwB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 36.0 2.74e-01 73.8% 95.1%
6ctzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 40.0 3.63e-01 93.4% 91.4%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.43e-01 95.1% 93.4%
3lzhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 39.0 3.62e-01 93.4% 95.6%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 2.69e-01 98.4% 40.8%
3oyyB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.82e-01 78.7% 100.0%
4bjjB00 2.60.40.4370 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.42e-01 82.0% 80.0%
3tssA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.72e-01 85.2% 100.0%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 2.86e-01 96.7% 54.2%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 38.0 3.60e-01 83.6% 76.0%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.50 35.0 3.71e-01 75.4% 100.0%
4k22B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 41.0 2.82e-01 96.7% 55.5%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3299797 4.1.1.306 beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.71 49.0 5.00e-01 100.0% 75.0%
5033600 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 42.0 4.64e-01 77.0% 75.5%
3930643 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.46e-01 100.0% 85.0%
3216433 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.68 44.0 5.05e-01 91.8% 100.0%
None 0.68 47.0 2.53e-01 100.0% 3.5%
5051148 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 42.0 4.25e-01 93.4% 63.3%
3435395 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.66 49.0 3.35e-01 78.7% 36.6%
5042477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 41.0 4.52e-01 95.1% 84.4%
4191690 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.66 44.0 4.48e-01 98.4% 72.4%
3300848 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.65 43.0 3.61e-01 98.4% 39.8%
3546607 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.64 45.0 4.81e-01 98.4% 90.0%
3577864 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.64 44.0 4.06e-01 100.0% 54.1%
4882420 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.64 43.0 4.58e-01 98.4% 86.3%
3775592 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 44.0 2.34e-01 100.0% 2.9%
3616007 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.63 45.0 4.68e-01 95.1% 85.5%
3931369 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 44.0 4.67e-01 73.8% 96.0%
5028370 2006.1.6.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.63 41.0 2.78e-01 88.5% 17.4%
3937333 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 48.0 4.41e-01 100.0% 63.7%
4418620 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 43.0 2.39e-01 100.0% 4.4%
3782325 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 51.0 5.09e-01 100.0% 90.5%
3235419 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 48.0 4.88e-01 100.0% 90.0%
3414063 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.61 45.0 4.70e-01 98.4% 89.1%
3903213 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 42.0 3.12e-01 100.0% 26.3%
3554026 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.59 45.0 4.53e-01 100.0% 86.7%
3553983 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.59 45.0 4.54e-01 100.0% 86.7%
3687555 4.1.1.320 beta barrels › SH3 › SH3 › SH3 › SH3_CYT4 0.59 42.0 3.69e-01 100.0% 48.0%
4937423 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.59e-01 100.0% 71.8%
3370807 386.1.1.372 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SWIM 0.59 48.0 4.04e-01 93.4% 58.7%
3520270 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.59 38.0 3.21e-01 78.7% 37.1%
4101587 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.58 48.0 4.17e-01 98.4% 62.9%
1746358 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.13e-01 98.4% 68.5%
3165077 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.58 50.0 4.86e-01 100.0% 87.1%
4945675 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.58 46.0 3.51e-01 100.0% 36.7%
4614224 2.1.1.60 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.57 40.0 4.34e-01 73.8% 94.0%
4557124 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.57 44.0 4.32e-01 100.0% 78.6%
3498860 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 42.0 2.72e-01 83.6% 24.6%
3899838 2.1.1.226 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29086 0.56 41.0 3.57e-01 82.0% 87.6%
2482315 2.1.1.60 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.55 39.0 4.19e-01 78.7% 86.8%
4976969 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.55 42.0 4.03e-01 86.9% 73.3%
4614733 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 43.0 3.53e-01 88.5% 92.8%
3924469 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 42.0 2.91e-01 83.6% 36.4%
4979129 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.55 38.0 2.89e-01 72.1% 87.9%
4269264 2.1.1.60 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.55 38.0 4.24e-01 80.3% 97.8%
5070602 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.55 37.0 2.93e-01 72.1% 94.3%
3972407 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 44.0 3.21e-01 90.2% 96.0%
4982571 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.53 38.0 3.89e-01 98.4% 81.0%
3520790 3735.1.1.0 beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein 0.53 40.0 2.62e-01 86.9% 80.9%
4114715 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 44.0 3.77e-01 96.7% 80.0%
4939428 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.53 38.0 3.86e-01 100.0% 80.0%
4888761 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 39.0 2.85e-01 83.6% 44.7%
4022346 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.52 36.0 2.41e-01 77.0% 86.2%
5033675 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 43.0 2.66e-01 96.7% 38.7%
3608479 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 38.0 2.29e-01 85.2% 32.6%
5074066 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.51 36.0 2.88e-01 77.0% 94.3%
4626642 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 42.0 3.89e-01 93.4% 92.5%
3402362 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 38.0 3.16e-01 86.9% 78.5%
3727719 7577.1.1.1 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.51 40.0 2.33e-01 91.8% 94.3%
4013462 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 37.0 2.45e-01 90.2% 16.9%
5005814 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 38.0 4.17e-01 83.6% 100.0%
4099755 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.50 42.0 2.55e-01 98.4% 35.7%
3968112 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.50 39.0 3.01e-01 88.5% 93.5%