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NC_029067.1__YP_009223092.1__VPLG_00243__00243

Bact-Vir

NC_029067.1__YP_009223092.1__VPLG_00243__00243

Identity

Accession:
NC_029067 ↗
Kingdom:
phage

Quality

74.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_eugene_12A10

TaxID: 573172

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-65
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dolA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.68 48.0 3.59e-01 74.6% 65.4%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.66 47.0 3.54e-01 76.2% 83.9%
1nrvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 47.0 4.09e-01 96.8% 53.0%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 47.0 4.38e-01 92.1% 73.9%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.60 36.0 4.18e-01 76.2% 94.9%
4dimA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 48.0 3.40e-01 100.0% 58.4%
6n9aB02 3.30.420.200 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 39.0 3.80e-01 71.4% 72.5%
1yf9A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 45.0 3.58e-01 100.0% 71.5%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 48.0 3.92e-01 98.4% 88.3%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 46.0 3.84e-01 100.0% 90.0%
4dwpA02 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.53 37.0 2.58e-01 74.6% 32.6%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.52 39.0 4.04e-01 82.5% 100.0%
3h6zA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 3.68e-01 100.0% 64.3%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.51 33.0 3.18e-01 88.9% 53.2%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.51 43.0 4.21e-01 100.0% 90.1%
3owvB00 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.51 38.0 2.65e-01 100.0% 22.8%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.11e-01 82.5% 44.1%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.51 42.0 4.11e-01 100.0% 87.3%
1usuB00 3.15.10.20 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Activator of Hsp90 ATPase Aha1, N-terminal domain 0.50 39.0 3.25e-01 93.7% 81.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3913579 386.1.1.279 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF27065 0.66 51.0 5.40e-01 98.4% 98.2%
2770367 1.1.7.43 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CoV_NSP13_1B 0.60 41.0 3.77e-01 85.7% 53.6%
3328891 4.1.1.296 ↗ beta barrels › SH3 › SH3 › SH3 › TDBD 0.58 43.0 4.32e-01 84.1% 80.0%
3576812 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.57 44.0 3.86e-01 84.1% 61.1%
3734418 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.57 46.0 3.07e-01 100.0% 59.4%
3509371 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 47.0 3.96e-01 96.8% 53.9%
3646521 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.56 42.0 3.98e-01 84.1% 69.3%
3787821 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 41.0 3.61e-01 84.1% 72.4%
3520870 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.55 38.0 2.53e-01 73.0% 27.1%
4114467 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.55 43.0 3.24e-01 90.5% 65.7%
3175902 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 39.0 4.04e-01 79.4% 86.7%
5792 295.1.1.6 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.55 48.0 3.92e-01 100.0% 88.4%
3389857 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 46.0 3.63e-01 100.0% 44.3%
5791 295.1.1.6 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.53 45.0 3.77e-01 100.0% 89.9%
3747392 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.53 40.0 4.02e-01 82.5% 86.2%
5040234 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 34.0 2.93e-01 88.9% 35.7%
3755589 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 40.0 3.55e-01 87.3% 69.0%
3455406 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.52 37.0 3.04e-01 79.4% 50.8%
4139105 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.51 36.0 2.71e-01 96.8% 28.2%
3399971 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.69e-01 100.0% 18.5%
4275209 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.51 38.0 2.99e-01 92.1% 66.7%