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NC_029067.1__YP_009223099.1__VPLG_00250__00250
Bact-VirNC_029067.1__YP_009223099.1__VPLG_00250__00250
Identity
- Accession:
- NC_029067 ↗
- Kingdom:
- phage
Quality
85.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-94
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21817.4 best | CapR | 35.1 | 1.70e-08 | 73.9% | 95.5% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wzvA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.59 | 50.0 | 4.28e-01 | 97.7% | 86.7% |
| 3o2uA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.59 | 49.0 | 4.15e-01 | 96.6% | 65.4% |
| 2g2sA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.57 | 31.0 | 3.52e-01 | 78.4% | 71.9% |
| 2ebkA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.56 | 46.0 | 4.11e-01 | 90.9% | 88.3% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 36.0 | 3.96e-01 | 70.5% | 85.5% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.54 | 31.0 | 3.47e-01 | 78.4% | 73.8% |
| 7bvaA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.54 | 40.0 | 3.00e-01 | 78.4% | 40.7% |
| 4c47A01 | 2.60.40.1620 | Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like | 0.53 | 44.0 | 3.99e-01 | 92.0% | 95.9% |
| 4wyqB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 38.0 | 4.08e-01 | 84.1% | 92.0% |
| 3rwxA02 | 2.40.128.350 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 40.0 | 3.64e-01 | 86.4% | 88.6% |
| 1k90A02 | 3.90.1760.10 | Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain | 0.52 | 34.0 | 2.87e-01 | 79.5% | 36.5% |
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 37.0 | 3.68e-01 | 75.0% | 78.0% |
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 40.0 | 3.93e-01 | 84.1% | 78.7% |
| 5w3xD01 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.52 | 33.0 | 3.66e-01 | 70.5% | 87.7% |
| 2dawA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.52 | 43.0 | 3.78e-01 | 93.2% | 94.0% |
| 4ge6A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 39.0 | 2.69e-01 | 81.8% | 29.0% |
| 3q90B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 40.0 | 3.61e-01 | 87.5% | 93.8% |
| 3jv1A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.51 | 36.0 | 2.94e-01 | 75.0% | 59.3% |
| 2daxA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.51 | 41.0 | 3.60e-01 | 92.0% | 88.7% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 40.0 | 3.48e-01 | 87.5% | 80.3% |
| 4ikcA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.50 | 36.0 | 2.65e-01 | 77.3% | 37.6% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4367775 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.64 | 44.0 | 2.92e-01 | 70.5% | 32.9% |
| 3484700 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.64 | 47.0 | 4.49e-01 | 76.1% | 85.0% |
| 3164281 | 5069.1.1.92 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › CcmF_C | 0.60 | 43.0 | 4.12e-01 | 75.0% | 73.0% |
| 4030478 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.60 | 50.0 | 4.36e-01 | 96.6% | 87.6% |
| 3240738 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.57 | 44.0 | 2.94e-01 | 79.5% | 26.8% |
| 4021395 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 43.0 | 2.89e-01 | 79.5% | 45.5% |
| 165196 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.56 | 46.0 | 4.11e-01 | 90.9% | 88.3% |
| 4937122 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.56 | 40.0 | 4.26e-01 | 73.9% | 92.0% |
| 4220848 | 2484.1.1.103 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tab2-like_N | 0.55 | 37.0 | 2.76e-01 | 75.0% | 25.5% |
| 5054433 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 27.0 | 3.41e-01 | 70.5% | 80.0% |
| 3932999 | 2007.2.3.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK | 0.55 | 41.0 | 2.75e-01 | 79.5% | 29.4% |
| 3583630 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.55 | 41.0 | 2.67e-01 | 79.5% | 21.8% |
| 4629131 | 9.29.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK | 0.54 | 42.0 | 3.87e-01 | 86.4% | 78.0% |
| 3601323 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.54 | 47.0 | 3.97e-01 | 100.0% | 94.4% |
| 3555226 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.54 | 46.0 | 4.00e-01 | 100.0% | 94.5% |
| 3927145 | 2007.2.3.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK | 0.54 | 40.0 | 2.71e-01 | 78.4% | 26.3% |
| 3198325 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 41.0 | 2.90e-01 | 85.2% | 47.3% |
| None | — | 0.53 | 40.0 | 2.74e-01 | 79.5% | 25.9% | |
| 3788566 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.53 | 46.0 | 3.93e-01 | 100.0% | 77.3% |
| 3738244 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.53 | 40.0 | 2.76e-01 | 79.5% | 27.1% |
| 3925839 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.53 | 40.0 | 2.69e-01 | 79.5% | 24.7% |
| 3937102 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.52 | 38.0 | 3.14e-01 | 78.4% | 81.1% |
| 3477855 | 642.1.1.2 ↗ | a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › SARA_C | 0.52 | 40.0 | 3.18e-01 | 84.1% | 59.1% |
| 3481228 | 642.1.1.0 ↗ | a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain | 0.52 | 40.0 | 3.19e-01 | 84.1% | 58.8% |
| 3213638 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.52 | 43.0 | 3.64e-01 | 94.3% | 81.3% |
| 4234560 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.52 | 40.0 | 3.42e-01 | 80.7% | 63.7% |
| None | — | 0.52 | 39.0 | 2.70e-01 | 79.5% | 27.2% | |
| 3700622 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.51 | 40.0 | 2.79e-01 | 87.5% | 83.1% |
| None | — | 0.51 | 40.0 | 3.07e-01 | 89.8% | 75.7% | |
| 3938060 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.50 | 36.0 | 3.06e-01 | 79.5% | 89.7% |
| 3578274 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.50 | 38.0 | 2.56e-01 | 80.7% | 22.1% |
| 3723442 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.50 | 40.0 | 3.57e-01 | 88.6% | 64.6% |
D2
high
residues 106-211
Domain cluster:
rep: OM835951.1__UNI73656.1__KP12_246__00246__D220-313
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.59 | 31.0 | 3.71e-01 | 99.1% | 77.3% |
| 1konA02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.59 | 43.0 | 4.66e-01 | 87.7% | 88.9% |
| 6w6vE01 | 3.30.70.3250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit | 0.58 | 45.0 | 4.00e-01 | 83.0% | 98.1% |
| 1d1rA00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.57 | 38.0 | 4.14e-01 | 99.1% | 86.7% |
| 3aqoA01 | 3.30.70.3400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 37.0 | 4.24e-01 | 86.8% | 91.3% |
| 1mw7A02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.55 | 43.0 | 4.67e-01 | 86.8% | 98.9% |
| 5l6gA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.55 | 44.0 | 3.43e-01 | 84.9% | 78.6% |
| 3en9A03 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 37.0 | 4.27e-01 | 85.8% | 100.0% |
| 3rjaA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.54 | 43.0 | 3.36e-01 | 84.9% | 77.3% |
| 1yk9A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.51 | 38.0 | 3.19e-01 | 90.6% | 45.7% |
| 2j3lA03 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.50 | 39.0 | 3.49e-01 | 100.0% | 59.2% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3946107 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.84 | 70.0 | 7.38e-01 | 100.0% | 96.8% |
| 4016088 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.80 | 70.0 | 7.06e-01 | 100.0% | 93.3% |
| 3597677 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.80 | 65.0 | 6.54e-01 | 100.0% | 86.7% |
| 3698242 | 821.1.1.10 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 | 0.77 | 63.0 | 6.01e-01 | 100.0% | 74.8% |
| 4995671 | 3115.1.1.12 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 | 0.74 | 36.0 | 4.99e-01 | 100.0% | 98.0% |
| 3735748 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.73 | 63.0 | 5.35e-01 | 100.0% | 58.2% |
| 3390562 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.69 | 37.0 | 4.42e-01 | 94.3% | 78.6% |
| 4996322 | 821.1.1.14 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 | 0.62 | 46.0 | 4.70e-01 | 100.0% | 81.0% |
| 3416551 | 4007.1.1.0 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins | 0.61 | 43.0 | 4.91e-01 | 86.8% | 97.5% |
| 3503254 | 4007.1.1.0 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins | 0.58 | 43.0 | 4.84e-01 | 86.8% | 98.8% |
| 3218109 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.56 | 45.0 | 4.85e-01 | 86.8% | 98.9% |
| 4038267 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.56 | 44.0 | 4.55e-01 | 87.7% | 87.9% |
| 4079979 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.52 | 34.0 | 3.62e-01 | 89.6% | 75.6% |
| 3716774 | 306.5.1.2 ↗ | a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP › PF28980 | 0.52 | 37.0 | 3.68e-01 | 99.1% | 69.6% |
| 3280934 | 304.51.1.3 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_assoc | 0.51 | 38.0 | 3.42e-01 | 79.2% | 90.0% |
| 5000700 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.51 | 41.0 | 4.11e-01 | 88.7% | 94.5% |
| 3381505 | 3767.1.1.0 ↗ | a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain | 0.51 | 42.0 | 3.58e-01 | 93.4% | 74.1% |
| 4028366 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.50 | 29.0 | 3.34e-01 | 84.0% | 79.7% |