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NC_029074.1__YP_009223937.1__AXJ10_gp29__00029

Bact-Vir

Identity

Accession:: NC_029074 ↗
Kingdom:: phage

Quality

93.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gordtnkvirus› Gordonia_phage_GordTnk2

TaxID: 1622192

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-68

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3qv2A02	3.90.120.10	Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2	0.72	50.0	4.06e-01	74.2%	91.7%
3ptaA01	3.90.120.10	Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2	0.72	55.0	4.19e-01	82.3%	73.4%
4cs4A01	1.10.287.540	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.55	39.0	4.16e-01	90.3%	96.1%
8d8lM01	1.10.8.50	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.54	41.0	3.77e-01	80.6%	98.8%
3gp4B00	1.10.1660.10	Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 ›	0.52	38.0	3.16e-01	85.5%	75.4%
3fmyA00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.51	35.0	3.48e-01	72.6%	92.4%
1jlcB03	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.50	37.0	3.01e-01	82.3%	52.6%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3458783	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.75	63.0	3.93e-01	91.9%	53.4%
3918690	2003.1.5.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase	0.74	64.0	3.97e-01	96.8%	36.9%
149260	2003.1.5.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase	0.73	64.0	4.07e-01	100.0%	38.1%
3892060	2003.1.5.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase	0.71	64.0	4.01e-01	100.0%	20.0%
3645180	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.70	61.0	4.25e-01	100.0%	31.1%
3520440	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.69	62.0	4.04e-01	100.0%	24.4%
3452652	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.63	46.0	3.28e-01	80.6%	42.4%
3587522	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.60	45.0	4.41e-01	87.1%	100.0%
5039400	2484.1.1.34 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1	0.56	41.0	2.73e-01	80.6%	62.3%
3995128	3722.1.1.0 ↗	alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain	0.55	44.0	3.12e-01	96.8%	50.2%
3957040	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.54	41.0	3.66e-01	83.9%	70.5%
5041445	101.1.9.17 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1	0.52	40.0	3.65e-01	88.7%	75.6%
3604455	4159.1.1.0 ↗	alpha arrays › SP0561-like › SP0561-like › SP0561-like	0.52	37.0	3.58e-01	80.6%	86.7%
380799	101.1.4.23 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MqsA_antitoxin	0.51	35.0	3.48e-01	72.6%	92.4%