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NC_029074.1__YP_009223953.1__AXJ10_gp45__00045

Bact-Vir

NC_029074.1__YP_009223953.1__AXJ10_gp45__00045

Identity

Accession:
NC_029074 ↗
Kingdom:
phage

Quality

77.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-53
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.85 75.0 5.54e-01 100.0% 77.1%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.84 62.0 5.54e-01 87.2% 56.9%
3pf7B00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.80 64.0 3.60e-01 85.1% 28.1%
4ivkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.74 57.0 3.35e-01 100.0% 10.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.71 54.0 4.42e-01 93.6% 43.5%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.71 58.0 4.69e-01 100.0% 46.3%
2fqmA01 6.10.140.830 Special › Helix non-globular › Helix Hairpins › 0.71 50.0 5.05e-01 74.5% 76.1%
1vrmA01 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.71 58.0 3.70e-01 97.9% 20.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.70 53.0 3.75e-01 100.0% 24.6%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.69 53.0 4.34e-01 93.6% 43.6%
4p1mB01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.68 50.0 5.11e-01 100.0% 84.4%
4i1sB00 4.10.80.340 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.68 44.0 4.29e-01 76.6% 59.6%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.68 54.0 4.41e-01 93.6% 46.6%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.67 50.0 3.87e-01 100.0% 33.9%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.67 56.0 3.28e-01 100.0% 78.2%
4cllA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.67 54.0 3.63e-01 97.9% 44.8%
2jl8102 3.30.160.850 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 43.0 4.41e-01 91.5% 68.9%
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 49.0 3.19e-01 78.7% 22.1%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 57.0 4.13e-01 100.0% 35.5%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.65 50.0 4.32e-01 93.6% 53.2%
2wxfA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 50.0 3.70e-01 89.4% 32.8%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.64 55.0 4.26e-01 100.0% 79.8%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 3.96e-01 91.5% 76.5%
2v0uA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 57.0 3.96e-01 97.9% 56.8%
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.63 49.0 4.14e-01 80.9% 100.0%
3maeA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.63 51.0 3.30e-01 91.5% 30.8%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.63 54.0 3.28e-01 100.0% 39.1%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 54.0 4.39e-01 95.7% 53.0%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.63 50.0 4.28e-01 87.2% 80.0%
1ek9A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.62 54.0 3.12e-01 97.9% 56.8%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 50.0 4.19e-01 93.6% 89.4%
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 49.0 4.04e-01 100.0% 47.3%
4je3B00 3.10.20.720 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.62 45.0 3.90e-01 80.9% 55.8%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 43.0 2.79e-01 72.3% 100.0%
1okjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 45.0 3.47e-01 100.0% 32.3%
1euvB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 41.0 3.63e-01 95.7% 45.6%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 45.0 3.96e-01 87.2% 55.3%
3en9A03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 48.0 4.26e-01 97.9% 68.5%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.58 51.0 3.09e-01 100.0% 20.5%
1wmhB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 46.0 3.90e-01 100.0% 52.4%
1i5eA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 46.0 3.00e-01 87.2% 21.6%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.57 45.0 3.13e-01 89.4% 37.1%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.57 51.0 3.64e-01 100.0% 67.2%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.57 48.0 3.25e-01 97.9% 60.3%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.56 51.0 4.25e-01 100.0% 74.4%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 42.0 2.84e-01 83.0% 56.0%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 44.0 2.87e-01 93.6% 39.1%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 47.0 3.78e-01 97.9% 89.6%
2kdnA00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.55 39.0 3.18e-01 83.0% 37.0%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.55 40.0 3.86e-01 100.0% 69.1%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 42.0 3.19e-01 89.4% 55.0%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 46.0 3.04e-01 93.6% 42.1%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.53 42.0 3.15e-01 100.0% 46.9%
1ex0B02 3.90.260.10 Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like 0.53 42.0 2.66e-01 100.0% 55.3%
3qjlA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 43.0 3.18e-01 91.5% 36.1%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 37.0 2.37e-01 76.6% 28.2%
2fnjB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 43.0 3.48e-01 100.0% 81.6%
4q1vA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.51 43.0 2.52e-01 97.9% 93.5%
1wduB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 42.0 2.73e-01 93.6% 29.7%
1xi7A00 4.10.40.20 Few Secondary Structures › Irregular › Omega-AgatoxinV › 0.50 32.0 3.23e-01 74.5% 63.8%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4018584 6155.1.1.15 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF846 0.78 53.0 3.68e-01 72.3% 34.0%
5049862 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 61.0 4.05e-01 85.1% 38.9%
3988478 857.1.1.1 a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA 0.75 58.0 4.57e-01 100.0% 40.8%
4001707 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.74 57.0 4.63e-01 83.0% 85.9%
5010022 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.72 59.0 5.04e-01 100.0% 96.5%
3905302 284.1.3.8 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › Fy-3 0.72 56.0 4.52e-01 83.0% 82.4%
5078000 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.71 53.0 3.25e-01 80.9% 14.4%
5029914 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.71 52.0 5.06e-01 83.0% 74.5%
3684015 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.71 51.0 4.05e-01 78.7% 82.0%
4608174 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.70 57.0 4.54e-01 87.2% 50.0%
5010744 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 59.0 5.33e-01 95.7% 92.3%
4072997 263.1.1.7 a+b three layers › SRF-like › SRF-like › SRF-like › Nrf1_DNA-bind 0.70 47.0 3.88e-01 97.9% 42.3%
3857887 5094.1.1.11 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3 0.69 56.0 4.72e-01 87.2% 93.3%
3560901 601.19.1.20 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.69 56.0 4.72e-01 87.2% 93.3%
3774738 7529.1.1.11 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF2362 0.69 56.0 4.52e-01 87.2% 82.4%
4931277 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.69 56.0 3.91e-01 89.4% 46.5%
3679515 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.69 53.0 5.37e-01 87.2% 93.3%
5006770 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.69 52.0 3.53e-01 80.9% 83.7%
3890772 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.68 48.0 4.05e-01 74.5% 50.7%
4983992 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.68 52.0 3.69e-01 87.2% 41.3%
4997639 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 57.0 4.35e-01 93.6% 69.5%
5029930 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 59.0 4.60e-01 97.9% 46.0%
5050683 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 56.0 4.26e-01 100.0% 41.6%
5073431 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.67 56.0 3.20e-01 95.7% 19.0%
5065366 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.66 57.0 4.29e-01 97.9% 40.8%
4516909 213.1.1.8 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › HlyC 0.66 56.0 3.90e-01 100.0% 29.7%
4034138 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.66 56.0 4.14e-01 100.0% 35.3%
3482807 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.65 56.0 4.36e-01 100.0% 77.8%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.65 51.0 4.78e-01 93.6% 69.5%
4183868 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.65 57.0 4.84e-01 100.0% 60.8%
5043001 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.64 41.0 3.14e-01 72.3% 29.5%
3326759 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.64 53.0 4.51e-01 91.5% 57.3%
4954852 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.63 57.0 3.82e-01 97.9% 95.4%
5066982 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.63 54.0 3.84e-01 93.6% 56.4%
4647118 5086.1.1.119 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › RRG1_C 0.62 56.0 3.55e-01 100.0% 20.9%
4364399 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.62 52.0 4.27e-01 95.7% 100.0%
3921728 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.62 54.0 4.05e-01 97.9% 89.6%
4977735 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.61 52.0 3.53e-01 95.7% 48.6%
4304389 5086.1.1.119 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › RRG1_C 0.61 55.0 3.52e-01 100.0% 21.4%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.61 47.0 4.22e-01 93.6% 58.6%
3959570 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.61 54.0 3.72e-01 97.9% 29.4%
4987228 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.60 53.0 3.60e-01 100.0% 29.0%
3583046 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 45.0 4.38e-01 93.6% 76.4%
3605370 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.59 48.0 4.50e-01 97.9% 71.7%
4991742 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 49.0 3.53e-01 91.5% 95.4%
4964833 304.24.1.40 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › BAT 0.59 39.0 3.68e-01 83.0% 55.0%
3708849 10.1.1.56 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.58 51.0 3.12e-01 100.0% 17.3%
3684317 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.58 46.0 2.57e-01 91.5% 6.0%
4957785 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.57 48.0 3.72e-01 100.0% 44.5%
3259141 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.57 45.0 4.17e-01 89.4% 68.3%
1815422 566.1.1.3 alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap 0.57 51.0 3.25e-01 100.0% 46.8%
3350473 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 43.0 3.79e-01 87.2% 55.7%
5041727 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.56 46.0 3.26e-01 93.6% 30.6%
3367891 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.55 45.0 2.75e-01 91.5% 13.4%
3620946 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 46.0 4.40e-01 95.7% 98.2%
3962463 4011.1.1.0 beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins 0.53 45.0 4.30e-01 97.9% 83.6%
5039979 604.2.1.1 alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C 0.52 42.0 3.18e-01 100.0% 57.8%
5030555 3433.1.1.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.52 35.0 3.78e-01 83.0% 85.0%