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NC_029074.1__YP_009223986.1__AXJ10_gp78__00078
Bact-VirNC_029074.1__YP_009223986.1__AXJ10_gp78__00078
Identity
- Accession:
- NC_029074 ↗
- Kingdom:
- phage
Quality
89.2
mean pLDDT
Taxonomy
TaxID: 1622192
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-74
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c9rA04 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.63 | 55.0 | 4.86e-01 | 100.0% | 95.3% |
| 5umsA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 46.0 | 4.16e-01 | 92.9% | 55.9% |
| 3hl6A01 | 3.30.1300.50 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Putative mobile pathogenicity island, N-terminal domain | 0.61 | 36.0 | 3.59e-01 | 94.3% | 55.4% |
| 4ioyX02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 45.0 | 3.95e-01 | 91.4% | 51.3% |
| 1y1uA04 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 44.0 | 4.11e-01 | 85.7% | 67.8% |
| 1x3cA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.57 | 35.0 | 3.48e-01 | 80.0% | 58.9% |
| 2cocA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 37.0 | 3.40e-01 | 77.1% | 49.0% |
| 4mo0A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.56 | 44.0 | 4.25e-01 | 87.1% | 98.7% |
| 3hxlA02 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 40.0 | 3.73e-01 | 88.6% | 60.0% |
| 1tulA00 | 2.70.40.20 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Baculovirus telokin-like protein 20 | 0.55 | 37.0 | 3.33e-01 | 100.0% | 48.0% |
| 2eo6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 41.0 | 3.66e-01 | 84.3% | 81.5% |
| 2d9hA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.54 | 35.0 | 3.36e-01 | 71.4% | 57.7% |
| 2aehA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 43.0 | 3.81e-01 | 92.9% | 57.7% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 31.0 | 3.31e-01 | 82.9% | 62.3% |
| 1nrvA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 41.0 | 3.78e-01 | 88.6% | 72.0% |
| 4aqlA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.53 | 42.0 | 3.51e-01 | 91.4% | 47.3% |
| 2fwrA01 | 3.40.1170.30 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › | 0.53 | 40.0 | 4.30e-01 | 91.4% | 100.0% |
| 1rpyB00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 37.0 | 3.53e-01 | 81.4% | 60.5% |
| 2izvA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 45.0 | 3.53e-01 | 100.0% | 53.4% |
| 2ljuA01 | 3.30.160.190 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › atu1810 like domain | 0.53 | 42.0 | 4.12e-01 | 87.1% | 100.0% |
| 3lmlA03 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 39.0 | 3.69e-01 | 87.1% | 67.1% |
| 1r6xA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 44.0 | 3.23e-01 | 100.0% | 54.9% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3800680 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.78 | 40.0 | 5.33e-01 | 77.1% | 100.0% |
| 3592744 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.65 | 47.0 | 3.87e-01 | 75.7% | 68.8% |
| 3636590 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.65 | 38.0 | 3.13e-01 | 70.0% | 33.3% |
| 3315195 | 2484.1.1.106 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 | 0.61 | 53.0 | 3.72e-01 | 98.6% | 30.9% |
| 1097199 | 3139.1.1.1 ↗ | a+b complex topology › pathogenicity island 3 ORF9 protein › pathogenicity island 3 ORF9 protein › pathogenicity island 3 ORF9 protein › SAPI | 0.61 | 36.0 | 3.04e-01 | 94.3% | 34.2% |
| 3457030 | 2484.1.1.106 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 | 0.60 | 50.0 | 3.73e-01 | 97.1% | 35.0% |
| 4053786 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.60 | 46.0 | 4.10e-01 | 94.3% | 57.1% |
| 4382988 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.59 | 48.0 | 4.08e-01 | 95.7% | 54.2% |
| 3580938 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.58 | 45.0 | 3.63e-01 | 85.7% | 42.1% |
| 3513932 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.58 | 45.0 | 3.91e-01 | 87.1% | 70.4% |
| 3616598 | 708.1.1.16 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC | 0.58 | 41.0 | 3.75e-01 | 75.7% | 100.0% |
| 8338 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 35.0 | 3.71e-01 | 84.3% | 70.5% |
| 3462989 | 80.1.1.1 ↗ | beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn | 0.53 | 36.0 | 3.69e-01 | 97.1% | 71.4% |
| 4923630 | 108.1.1.128 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › DM10_dom | 0.53 | 43.0 | 3.78e-01 | 98.6% | 81.8% |
| 4890874 | 108.1.1.128 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › DM10_dom | 0.53 | 43.0 | 3.81e-01 | 98.6% | 85.3% |
| 5040710 | 2484.1.1.139 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 | 0.52 | 45.0 | 3.26e-01 | 100.0% | 57.3% |
| 3270273 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 43.0 | 2.55e-01 | 100.0% | 29.2% |
| 3481878 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.51 | 40.0 | 4.00e-01 | 85.7% | 82.9% |
| 4456679 | 3234.1.1.2 ↗ | a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N | 0.51 | 43.0 | 2.95e-01 | 100.0% | 56.5% |
| 3815957 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.51 | 41.0 | 2.73e-01 | 92.9% | 96.6% |
| 3929385 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.50 | 42.0 | 2.97e-01 | 100.0% | 46.9% |