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NC_029074.1__YP_009224005.1__AXJ10_gp97__00097
Bact-VirNC_029074.1__YP_009224005.1__AXJ10_gp97__00097
Identity
- Accession:
- NC_029074 ↗
- Kingdom:
- phage
Quality
80.0
mean pLDDT
Taxonomy
TaxID: 1622192
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-56
Domain cluster:
rep: IMGVR_UViG_3300005835_000100-3300005835-Ga0078910_10067915__D4-44
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3goxA02 | 3.30.60.130 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.81 | 68.0 | 6.73e-01 | 90.4% | 88.9% |
| 2gviA03 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.73 | 45.0 | 5.29e-01 | 73.1% | 97.1% |
| 2zetC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.69 | 54.0 | 3.83e-01 | 88.5% | 30.5% |
| 1zbdB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.67 | 53.0 | 3.98e-01 | 84.6% | 35.8% |
| 1wimA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.67 | 56.0 | 4.62e-01 | 94.2% | 81.9% |
| 1y02A01 | 1.10.720.140 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.67 | 50.0 | 4.30e-01 | 86.5% | 52.6% |
| 7yuiB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.64 | 53.0 | 4.52e-01 | 94.2% | 87.5% |
| 2luyA01 | 3.30.60.210 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Stc1 domain | 0.64 | 50.0 | 4.88e-01 | 86.5% | 93.0% |
| 2m85A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 47.0 | 4.45e-01 | 84.6% | 69.2% |
| 2w0tA00 | 3.30.60.160 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.59 | 39.0 | 4.11e-01 | 82.7% | 81.4% |
| 5tdrA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.57 | 42.0 | 3.83e-01 | 96.2% | 58.6% |
| 1vd4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.55 | 37.0 | 3.59e-01 | 73.1% | 59.7% |
| 4tmaJ00 | 3.30.50.10 | Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A | 0.55 | 35.0 | 3.44e-01 | 78.8% | 59.6% |
| 2xjyA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.55 | 41.0 | 3.89e-01 | 90.4% | 68.3% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4979944 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.95 | 70.0 | 7.96e-01 | 80.8% | 100.0% |
| 3199914 | 377.1.1.22 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Stc1 | 0.83 | 61.0 | 6.92e-01 | 82.7% | 100.0% |
| 1002459 | 378.1.1.13 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › His_Me_b4a2 | 0.82 | 67.0 | 6.70e-01 | 86.5% | 88.5% |
| 3397474 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.81 | 58.0 | 6.47e-01 | 86.5% | 97.5% |
| 3186237 | 377.1.1.22 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Stc1 | 0.81 | 55.0 | 5.90e-01 | 71.2% | 100.0% |
| 3957054 | 377.1.1.87 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF4193 | 0.80 | 49.0 | 6.17e-01 | 71.2% | 100.0% |
| 3698386 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.80 | 56.0 | 5.48e-01 | 73.1% | 94.5% |
| 3731962 | 377.1.1.22 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Stc1 | 0.79 | 54.0 | 5.55e-01 | 71.2% | 100.0% |
| 3962784 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 49.0 | 5.90e-01 | 71.2% | 97.1% |
| 1779555 | 377.1.1.22 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Stc1 | 0.75 | 53.0 | 5.89e-01 | 78.8% | 95.1% |
| 3561303 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.75 | 65.0 | 4.50e-01 | 96.2% | 30.9% |
| 3701655 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.73 | 47.0 | 5.00e-01 | 71.2% | 75.6% |
| 3830263 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.73 | 49.0 | 4.98e-01 | 75.0% | 72.0% |
| 8199 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.73 | 45.0 | 5.32e-01 | 73.1% | 100.0% |
| 3206817 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.72 | 65.0 | 4.98e-01 | 100.0% | 93.9% |
| 3559289 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.72 | 60.0 | 5.08e-01 | 92.3% | 87.1% |
| 3869401 | 376.1.3.4 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 | 0.72 | 54.0 | 3.89e-01 | 84.6% | 30.0% |
| 4929415 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.71 | 52.0 | 4.98e-01 | 84.6% | 66.7% |
| 3430765 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.71 | 63.0 | 5.02e-01 | 98.1% | 82.0% |
| 4998890 | 377.1.1.7 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR | 0.71 | 44.0 | 4.72e-01 | 73.1% | 73.3% |
| 3606495 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.71 | 52.0 | 4.79e-01 | 80.8% | 62.5% |
| 3788517 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.71 | 62.0 | 4.55e-01 | 96.2% | 83.8% |
| 3733728 | 376.1.3.31 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 | 0.70 | 52.0 | 4.57e-01 | 96.2% | 52.5% |
| 3634446 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 48.0 | 5.11e-01 | 80.8% | 82.2% |
| 3623406 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.70 | 60.0 | 4.91e-01 | 96.2% | 87.4% |
| 3326051 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.70 | 60.0 | 4.90e-01 | 96.2% | 81.1% |
| 3380766 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.69 | 60.0 | 4.80e-01 | 96.2% | 80.0% |
| 5008357 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.69 | 43.0 | 4.97e-01 | 73.1% | 94.3% |
| 3255227 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.69 | 58.0 | 4.77e-01 | 94.2% | 78.9% |
| 3431026 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.69 | 58.0 | 4.72e-01 | 92.3% | 80.0% |
| 3225705 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.69 | 53.0 | 5.59e-01 | 86.5% | 95.6% |
| 3723227 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.69 | 57.0 | 4.89e-01 | 90.4% | 87.5% |
| 4442858 | 931.1.1.15 ↗ | few secondary structure elements › Metallothionein › Metallothionein › Metallothionein › PF26927 | 0.69 | 44.0 | 4.93e-01 | 75.0% | 97.1% |
| 4990133 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.68 | 51.0 | 5.05e-01 | 80.8% | 78.2% |
| 3636674 | 376.1.1.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ | 0.68 | 50.0 | 5.22e-01 | 78.8% | 87.8% |
| 5031996 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.68 | 50.0 | 4.98e-01 | 80.8% | 74.5% |
| 3837562 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 58.0 | 4.60e-01 | 96.2% | 81.0% |
| 3604881 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.67 | 48.0 | 4.62e-01 | 82.7% | 66.1% |
| 3211002 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 54.0 | 4.95e-01 | 90.4% | 90.0% |
| 3685606 | 376.1.3.31 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 | 0.67 | 53.0 | 4.89e-01 | 94.2% | 69.2% |
| 3924159 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.65 | 51.0 | 4.29e-01 | 86.5% | 52.2% |
| 5042937 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.65 | 45.0 | 4.48e-01 | 86.5% | 69.1% |
| 3702126 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.64 | 53.0 | 4.61e-01 | 96.2% | 90.6% |
| 3700533 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 51.0 | 3.27e-01 | 94.2% | 22.6% |
| 3534273 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.63 | 43.0 | 4.73e-01 | 73.1% | 95.0% |
| 3372361 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.62 | 44.0 | 4.83e-01 | 80.8% | 100.0% |
| 3705580 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.62 | 50.0 | 2.97e-01 | 90.4% | 14.5% |
| 3846283 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.62 | 49.0 | 5.03e-01 | 96.2% | 94.0% |
| 3705738 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.61 | 47.0 | 4.55e-01 | 86.5% | 73.3% |
| 4466003 | 376.1.3.44 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Siva | 0.61 | 46.0 | 4.34e-01 | 82.7% | 90.8% |
| 4995670 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 32.0 | 3.56e-01 | 71.2% | 62.5% |
| 5076094 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.58 | 44.0 | 4.25e-01 | 94.2% | 73.3% |
| 5074886 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.57 | 44.0 | 4.07e-01 | 86.5% | 77.1% |
| 3177203 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.57 | 38.0 | 4.04e-01 | 73.1% | 82.2% |
| 3913312 | 377.1.1.50 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 | 0.56 | 41.0 | 4.32e-01 | 80.8% | 97.8% |
| 3411509 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.56 | 40.0 | 4.29e-01 | 78.8% | 91.1% |
| 3300469 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.55 | 39.0 | 3.97e-01 | 78.8% | 80.0% |
| 3230855 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.54 | 45.0 | 3.39e-01 | 98.1% | 71.7% |
| 2878975 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.53 | 37.0 | 3.45e-01 | 80.8% | 56.6% |
| 3594353 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.51 | 42.0 | 3.96e-01 | 94.2% | 83.1% |
D2
medium
residues 57-152
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zbdB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.64 | 40.0 | 3.67e-01 | 89.6% | 49.6% |
| 4kc9A02 | 1.20.120.1750 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.63 | 38.0 | 2.86e-01 | 82.3% | 25.3% |
| 2oarB00 | 1.10.1200.120 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 | 0.56 | 41.0 | 3.79e-01 | 81.2% | 59.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3680502 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.64 | 36.0 | 3.10e-01 | 72.9% | 38.6% |
| 4156545 | 4991.1.1.105 ↗ | extended segments › Lag-3 N-terminal region › Lag-3 N-terminal region › Lag-3 N-terminal region › DUF1283 | 0.55 | 40.0 | 4.43e-01 | 90.6% | 98.7% |
| 1716752 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.55 | 34.0 | 2.53e-01 | 77.1% | 26.5% |
| 4946657 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.52 | 30.0 | 3.62e-01 | 81.2% | 86.2% |