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NC_029075.1__YP_009224026.1__AXJ13_gp020__00020
Bact-VirNC_029075.1__YP_009224026.1__AXJ13_gp020__00020
Identity
- Accession:
- NC_029075 ↗
- Kingdom:
- phage
Quality
52.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 464-590
Domain cluster:
rep: NC_003524.1__NP_612842.1__phi3626p13__00013__D344-469
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10145.15 best | PhageMin_Tail | 50.5 | 3.40e-13 | 99.2% | 44.8% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6rxaA01 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.67 | 42.0 | 4.95e-01 | 86.6% | 92.0% |
| 6wk3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 40.0 | 3.87e-01 | 72.4% | 91.7% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 42.0 | 4.02e-01 | 78.0% | 95.3% |
| 1zklA00 | 1.10.1300.10 | Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain | 0.56 | 43.0 | 3.22e-01 | 81.1% | 63.4% |
| 3hd6A00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.55 | 44.0 | 3.15e-01 | 86.6% | 73.9% |
| 2b9rA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 44.0 | 4.30e-01 | 100.0% | 77.9% |
| 4nlbA02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.54 | 39.0 | 4.35e-01 | 97.6% | 100.0% |
| 3ccgA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.54 | 47.0 | 4.12e-01 | 95.3% | 70.9% |
| 2wa5A01 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.53 | 37.0 | 4.00e-01 | 96.1% | 89.2% |
| 1vinA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 42.0 | 4.10e-01 | 100.0% | 77.7% |
| 4mcwA02 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.52 | 45.0 | 3.92e-01 | 96.1% | 97.9% |
| 1wjoA01 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.51 | 35.0 | 3.82e-01 | 94.5% | 87.5% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.50 | 33.0 | 3.75e-01 | 87.4% | 88.7% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3723532 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.57 | 51.0 | 3.69e-01 | 100.0% | 42.7% |
| 3740436 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.56 | 42.0 | 4.34e-01 | 97.6% | 84.2% |
| 4927559 | 102.1.1.30 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 | 0.56 | 36.0 | 4.18e-01 | 86.6% | 93.3% |
| 3932592 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.50 | 42.0 | 4.15e-01 | 97.6% | 84.4% |
D2
medium
residues 127-222
D3
medium
residues 342-450
Domain cluster:
rep: OR354825.1__WNM51604.1__CoNPh2_CDS0050__00048__D273-380_559-584
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10145.15 best | PhageMin_Tail | 40.3 | 4.80e-10 | 71.6% | 38.3% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 39.0 | 5.31e-01 | 81.7% | 93.1% |
| 3w0lD01 | 1.10.8.1080 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.61 | 41.0 | 4.29e-01 | 89.9% | 75.2% |
| 1f5qB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 42.0 | 4.24e-01 | 75.2% | 96.3% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 41.0 | 4.13e-01 | 73.4% | 95.5% |
| 3aljA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 44.0 | 3.54e-01 | 80.7% | 94.5% |
| 1w98B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 42.0 | 4.20e-01 | 78.0% | 96.5% |
| 6fjxA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.57 | 49.0 | 3.72e-01 | 95.4% | 69.0% |
| 4hjzA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.57 | 48.0 | 4.10e-01 | 93.6% | 80.3% |
| 2px0A01 | 1.20.120.1380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain | 0.57 | 35.0 | 4.09e-01 | 89.0% | 90.4% |
| 2azjA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.57 | 44.0 | 3.33e-01 | 83.5% | 68.1% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.57 | 43.0 | 3.25e-01 | 80.7% | 74.0% |
| 4bemJ00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.56 | 40.0 | 3.42e-01 | 74.3% | 65.2% |
| 4jz6A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.55 | 47.0 | 3.64e-01 | 94.5% | 69.2% |
| 1uzbA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.55 | 47.0 | 3.39e-01 | 95.4% | 63.5% |
| 2bl2A00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.52 | 37.0 | 3.31e-01 | 73.4% | 75.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032310 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.84 | 77.0 | 6.85e-01 | 99.1% | 72.0% |
| 3981280 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.84 | 77.0 | 6.94e-01 | 99.1% | 74.5% |
| 4030882 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.78 | 71.0 | 5.63e-01 | 98.2% | 78.1% |
| 3941716 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.75 | 68.0 | 6.38e-01 | 98.2% | 82.3% |
| 3891863 | 5049.1.2.1 ↗ | alpha complex topology › Ammonium transporter-related › Ammonium transporter-related › Urea transporter › UT | 0.60 | 50.0 | 3.51e-01 | 90.8% | 35.6% |
| 5077398 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.59 | 42.0 | 3.37e-01 | 73.4% | 89.8% |
| 3308397 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.59 | 45.0 | 4.71e-01 | 80.7% | 100.0% |
| 3391293 | 101.1.10.13 ↗ | alpha arrays › HTH › HTH › Cyclin-like › DUF3452 | 0.58 | 44.0 | 4.25e-01 | 79.8% | 93.3% |
| 3786052 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.57 | 39.0 | 3.29e-01 | 70.6% | 62.1% |
| 3407685 | 5038.2.1.1 ↗ | alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG | 0.54 | 38.0 | 3.59e-01 | 72.5% | 91.9% |
| 3927217 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.54 | 38.0 | 3.18e-01 | 71.6% | 59.5% |
| 4017733 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.52 | 39.0 | 3.44e-01 | 79.8% | 100.0% |
| 4028998 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.51 | 45.0 | 4.16e-01 | 100.0% | 84.8% |
| 4018373 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.51 | 40.0 | 2.61e-01 | 85.3% | 54.5% |
D4
medium
residues 1485-1510_1533-1576