←Back to structures

NC_029093.1__YP_009225423.1__SEA_MINDY_138__00136

Bact-Vir

NC_029093.1__YP_009225423.1__SEA_MINDY_138__00136

Identity

Accession:
NC_029093 ↗
Kingdom:
phage

Quality

89.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kostyavirus› Mycobacterium_phage_Mindy

TaxID: 1647311

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 46-108
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.69 53.0 5.02e-01 84.1% 74.0%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.68 53.0 4.27e-01 87.3% 43.5%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.81e-01 77.8% 91.8%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.53e-01 79.4% 76.7%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 44.0 4.37e-01 82.5% 83.8%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.59 40.0 4.38e-01 79.4% 93.8%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.58 43.0 4.47e-01 79.4% 96.6%
8aasC01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 42.0 3.60e-01 77.8% 72.5%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 3.84e-01 100.0% 57.1%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 45.0 4.61e-01 90.5% 100.0%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.55 44.0 3.72e-01 88.9% 56.9%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 4.25e-01 77.8% 100.0%
6baoA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 36.0 2.82e-01 77.8% 30.1%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.94e-01 100.0% 78.4%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.54 47.0 3.97e-01 100.0% 77.5%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 41.0 3.46e-01 85.7% 98.3%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.53 40.0 3.23e-01 87.3% 86.3%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 40.0 2.91e-01 84.1% 94.2%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 4.01e-01 95.2% 81.5%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 42.0 3.72e-01 100.0% 62.8%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4147290 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.75 55.0 5.43e-01 85.7% 73.8%
5078464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 47.0 5.31e-01 74.6% 95.6%
4147366 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.69 49.0 5.38e-01 81.0% 97.9%
4380345 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.68 54.0 4.92e-01 88.9% 67.1%
4007999 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.67 53.0 4.15e-01 87.3% 40.7%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.66 48.0 4.45e-01 90.5% 61.3%
5066224 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.65 51.0 4.56e-01 87.3% 63.3%
5058457 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 47.0 4.66e-01 79.4% 75.4%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 50.0 5.01e-01 87.3% 81.2%
4228570 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 49.0 4.58e-01 84.1% 82.5%
3786430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.79e-01 79.4% 92.0%
5065747 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.63 48.0 4.31e-01 87.3% 58.9%
4340758 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.48e-01 79.4% 85.7%
5006274 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.61 48.0 3.76e-01 87.3% 39.3%
4507539 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.61 47.0 4.09e-01 100.0% 54.0%
3261395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.42e-01 93.7% 84.5%
4024915 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.58 43.0 4.31e-01 93.7% 78.5%
3451171 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.30e-01 90.5% 80.0%
3714509 220.1.1.303 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26278 0.57 43.0 3.33e-01 84.1% 48.4%
3684646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.22e-01 88.9% 85.0%
3964733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.43e-01 90.5% 96.4%
5063097 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 38.0 3.73e-01 71.4% 90.0%
3485965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 42.0 4.31e-01 87.3% 88.3%
552 4.1.1.61 ↗ beta barrels › SH3 › SH3 › SH3 › KapB 0.55 44.0 3.72e-01 88.9% 56.9%
3580789 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 47.0 3.90e-01 100.0% 71.7%
3417150 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 47.0 3.49e-01 100.0% 58.2%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.54 39.0 3.88e-01 81.0% 82.9%
3449268 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.05e-01 100.0% 70.6%
3683031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 38.0 3.72e-01 79.4% 66.7%
3410256 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 40.0 2.77e-01 85.7% 36.8%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.51 38.0 3.70e-01 98.4% 72.9%
3527512 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.50 43.0 3.41e-01 100.0% 77.9%
3498264 219.1.1.53 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin 0.50 44.0 2.95e-01 100.0% 40.0%