←Back to structures
YP_009226248.1
Arc-VirNC_029103__YP_009226248.1__AXI69-gp25__00025
Identity
- Accession:
- NC_029103 ↗
- Protein ID:
- YP_009226248.1 ↗
- Kingdom:
- archaea
Quality
68.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-114
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ovcA01 | 3.30.200.150 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.64 | 38.0 | 4.59e-01 | 75.0% | 90.1% |
| 3u1wA02 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 38.0 | 4.67e-01 | 73.1% | 95.5% |
| 1tluA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.64 | 39.0 | 3.86e-01 | 96.3% | 56.4% |
| 2kieA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.62 | 36.0 | 3.47e-01 | 70.4% | 50.0% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.60 | 39.0 | 3.03e-01 | 100.0% | 28.5% |
| 3doaA01 | 2.30.310.10 | Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain | 0.60 | 48.0 | 4.28e-01 | 86.1% | 83.0% |
| 3frnA01 | 3.10.129.70 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › | 0.58 | 34.0 | 3.11e-01 | 71.3% | 44.6% |
| 2ffsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 40.0 | 3.69e-01 | 100.0% | 53.8% |
| 5yjlC02 | 3.20.180.10 | Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like | 0.57 | 42.0 | 4.19e-01 | 76.9% | 88.3% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.57 | 29.0 | 3.33e-01 | 74.1% | 65.0% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.56 | 36.0 | 3.58e-01 | 92.6% | 61.1% |
| 3sluB01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 40.0 | 4.32e-01 | 75.9% | 96.7% |
| 3w9kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 44.0 | 4.12e-01 | 100.0% | 68.1% |
| 7ne4A01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.55 | 46.0 | 3.27e-01 | 90.7% | 34.3% |
| 6eotD01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.55 | 47.0 | 3.04e-01 | 94.4% | 43.8% |
| 2xe4A02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.55 | 45.0 | 3.18e-01 | 90.7% | 32.4% |
| 5bncA02 | 3.20.180.10 | Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like | 0.54 | 36.0 | 3.82e-01 | 71.3% | 78.5% |
| 3tdgA01 | 3.10.450.520 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 31.0 | 3.65e-01 | 75.0% | 89.4% |
| 2oq1A03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 34.0 | 3.54e-01 | 86.1% | 69.0% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 37.0 | 3.56e-01 | 71.3% | 95.2% |
| 1mdcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 43.0 | 4.05e-01 | 86.1% | 90.1% |
| 1q47A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 44.0 | 2.90e-01 | 91.7% | 24.4% |
| 2a22B00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.53 | 40.0 | 3.28e-01 | 87.0% | 43.3% |
| 2xglA00 | 3.10.450.300 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein | 0.53 | 39.0 | 4.24e-01 | 79.6% | 96.7% |
| 3i1aA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 39.0 | 4.06e-01 | 79.6% | 96.1% |
| 1e5tA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.52 | 41.0 | 2.88e-01 | 90.7% | 26.1% |
| 2gfgA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.52 | 35.0 | 2.87e-01 | 100.0% | 39.3% |
| 4azpA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 40.0 | 3.78e-01 | 86.1% | 88.8% |
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.50 | 42.0 | 3.23e-01 | 93.5% | 39.4% |
| 2qmiA02 | 2.40.128.210 | Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain | 0.50 | 39.0 | 4.11e-01 | 86.1% | 92.0% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4216985 | 331.19.1.2 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin_N | 0.71 | 40.0 | 4.47e-01 | 100.0% | 70.6% |
| 3929502 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.70 | 35.0 | 3.72e-01 | 74.1% | 54.3% |
| 3961706 | 4.1.1.161 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4178 | 0.70 | 42.0 | 5.24e-01 | 89.8% | 100.0% |
| 3199320 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.69 | 35.0 | 3.49e-01 | 75.0% | 47.8% |
| 4285199 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.67 | 38.0 | 4.03e-01 | 100.0% | 62.1% |
| 3219425 | 5.1.3.238 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 | 0.62 | 46.0 | 4.35e-01 | 76.9% | 71.2% |
| 4355722 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.62 | 44.0 | 4.74e-01 | 86.1% | 84.2% |
| 3979195 | 274.1.1.35 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF2509 | 0.60 | 36.0 | 3.46e-01 | 97.2% | 50.4% |
| 3989328 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.59 | 44.0 | 4.69e-01 | 76.9% | 96.8% |
| 3988075 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 49.0 | 3.43e-01 | 90.7% | 30.9% |
| 6329 | 331.3.1.10 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AtaL | 0.58 | 40.0 | 3.62e-01 | 100.0% | 52.1% |
| 4028683 | 3504.3.1.0 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain | 0.58 | 46.0 | 3.91e-01 | 86.1% | 80.6% |
| 3462090 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.57 | 48.0 | 3.35e-01 | 91.7% | 33.1% |
| 3943357 | 274.1.1.35 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF2509 | 0.57 | 34.0 | 3.79e-01 | 97.2% | 75.3% |
| 3656110 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.57 | 48.0 | 3.40e-01 | 93.5% | 44.1% |
| 3661724 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 48.0 | 3.36e-01 | 93.5% | 44.2% |
| 3739945 | 5.1.4.164 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 | 0.56 | 48.0 | 3.31e-01 | 93.5% | 38.7% |
| 3167073 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.56 | 43.0 | 3.72e-01 | 86.1% | 54.4% |
| 4011809 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.55 | 42.0 | 2.80e-01 | 80.6% | 24.7% |
| 3266554 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.55 | 32.0 | 3.65e-01 | 100.0% | 77.5% |
| 3819081 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.54 | 45.0 | 3.26e-01 | 90.7% | 48.5% |
| 4008203 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 45.0 | 2.80e-01 | 92.6% | 18.5% |
| 2754825 | 5.1.4.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N | 0.54 | 45.0 | 3.07e-01 | 92.6% | 30.1% |
| 4263663 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.53 | 44.0 | 3.83e-01 | 89.8% | 59.4% |
| 3941130 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.53 | 44.0 | 3.15e-01 | 90.7% | 50.6% |
| 3256082 | 220.1.1.153 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 | 0.53 | 38.0 | 3.41e-01 | 74.1% | 65.5% |
| 3453488 | 243.5.1.1 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 | 0.53 | 42.0 | 4.33e-01 | 86.1% | 92.0% |
| 3387958 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.52 | 34.0 | 3.02e-01 | 100.0% | 45.8% |
| 3424575 | 220.1.1.153 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 | 0.52 | 37.0 | 3.88e-01 | 74.1% | 81.0% |
| 3791839 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.52 | 32.0 | 3.62e-01 | 92.6% | 82.5% |
| 4390303 | 5.1.3.238 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 | 0.52 | 45.0 | 2.81e-01 | 94.4% | 20.5% |
| 3417117 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 45.0 | 3.14e-01 | 93.5% | 34.2% |
| 3378830 | 220.1.1.153 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 | 0.52 | 37.0 | 3.35e-01 | 74.1% | 64.8% |
| 3514491 | 5.1.4.242 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N | 0.52 | 45.0 | 3.03e-01 | 93.5% | 29.2% |
| 3279517 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.52 | 44.0 | 2.67e-01 | 91.7% | 14.9% |
| 3922884 | 5.1.4.271 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 | 0.51 | 44.0 | 3.04e-01 | 93.5% | 29.2% |
| 3932182 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 42.0 | 3.07e-01 | 92.6% | 33.7% |
| None | — | 0.50 | 42.0 | 2.83e-01 | 94.4% | 94.0% |