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YP_009226277.1

Arc-Vir

NC_029103__YP_009226277.1__AXI69-gp54__00054

Identity

Accession:
NC_029103 ↗
Protein ID:
YP_009226277.1 ↗
Kingdom:
archaea

Quality

82.1 mean pLDDT

Taxonomy

TaxID: 1732177

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-101_203-221
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.58 41.0 4.01e-01 71.7% 74.4%
2yzcA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.58 53.0 3.99e-01 100.0% 73.9%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.57 41.0 3.79e-01 91.7% 59.7%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.56 44.0 3.85e-01 83.3% 74.2%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 45.0 3.97e-01 86.7% 81.2%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.55 38.0 3.91e-01 74.2% 74.3%
4c00A04 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.55 48.0 3.53e-01 95.0% 71.7%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.55 48.0 4.53e-01 99.2% 78.5%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.54 41.0 3.63e-01 93.3% 55.7%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 47.0 4.37e-01 95.0% 97.3%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.54 46.0 4.45e-01 98.3% 81.4%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 41.0 3.07e-01 81.7% 79.9%
6kghA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 37.0 3.43e-01 91.7% 57.1%
3qktD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 37.0 2.79e-01 75.8% 44.7%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 39.0 3.49e-01 78.3% 91.5%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.51 37.0 3.55e-01 75.8% 82.1%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5033173 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.64 43.0 4.48e-01 95.8% 75.2%
3272884 71.1.1.16 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin_amoebozoa 0.63 50.0 4.21e-01 82.5% 82.2%
5051984 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 42.0 4.27e-01 87.5% 70.0%
3259314 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.59 33.0 3.58e-01 71.7% 63.0%
3984944 213.2.1.0 a+b three layers › Nat/Ivy › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme, Ivy 0.59 34.0 3.96e-01 72.5% 80.0%
4962629 71.1.1.27 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF7537 0.57 45.0 3.74e-01 82.5% 84.2%
3228776 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 44.0 3.28e-01 81.7% 39.0%
4255411 220.1.1.126 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.56 37.0 3.85e-01 81.7% 71.8%
5014331 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.56 43.0 2.64e-01 80.0% 99.3%
4568749 2004.1.1.585 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_21, AAA_23 0.56 43.0 3.07e-01 80.0% 98.6%
4262159 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.56 43.0 3.08e-01 80.0% 99.1%
4191276 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 42.0 2.64e-01 80.0% 99.4%
5054386 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.55 35.0 3.65e-01 91.7% 69.1%
4963006 4.1.1.490 beta barrels › SH3 › SH3 › SH3 › PF26269 0.55 34.0 3.95e-01 85.8% 87.1%
4952360 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.54 42.0 2.84e-01 80.0% 99.3%
3236870 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 41.0 4.00e-01 80.0% 87.7%
4052154 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.53 43.0 3.82e-01 86.7% 79.4%
5007696 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.52 33.0 3.53e-01 91.7% 72.4%
1290125 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 40.0 3.50e-01 82.5% 87.9%
5072279 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 40.0 2.75e-01 80.0% 99.5%
1290096 2004.1.1.199 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.52 41.0 3.55e-01 85.0% 88.9%
4880457 12.3.1.22 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GH97_N 0.52 36.0 2.80e-01 72.5% 83.4%
3257844 71.1.1.16 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin_amoebozoa 0.52 46.0 3.87e-01 96.7% 87.0%
3249471 71.1.1.16 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin_amoebozoa 0.51 47.0 3.95e-01 100.0% 88.0%
4936791 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 39.0 2.59e-01 79.2% 97.4%
5054272 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.51 39.0 2.47e-01 80.0% 99.7%
5054861 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.50 38.0 2.61e-01 80.8% 84.9%
D2 medium residues 102-202
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.65 33.0 4.18e-01 74.3% 85.7%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.64 34.0 3.40e-01 81.2% 48.1%
6qj2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 46.0 3.20e-01 79.2% 40.7%
2pmqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 39.0 3.58e-01 92.1% 49.6%
3px5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 37.0 3.57e-01 86.1% 53.4%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.59 38.0 3.70e-01 78.2% 56.8%
2qddA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 38.0 3.53e-01 88.1% 50.8%
1vp2A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.57 47.0 3.85e-01 90.1% 88.9%
1vpbA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.55 41.0 3.17e-01 78.2% 97.8%
3zghA00 2.60.40.3400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.22e-01 74.3% 74.0%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 35.0 3.19e-01 99.0% 50.8%
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 35.0 2.70e-01 70.3% 90.6%
2w3sB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.51 40.0 3.20e-01 84.2% 61.8%
1g84A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.98e-01 84.2% 100.0%
2amhA00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.51 42.0 3.42e-01 91.1% 93.3%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.51 42.0 3.97e-01 90.1% 76.2%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 36.0 3.64e-01 75.2% 72.1%
7x7zA01 2.40.480.10 Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like 0.50 36.0 3.32e-01 76.2% 86.3%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 36.0 3.19e-01 75.2% 52.7%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3940802 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 35.0 3.50e-01 93.1% 52.4%
3218632 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.63 39.0 4.09e-01 77.2% 67.0%
3286007 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.63 45.0 3.35e-01 74.3% 69.8%
3604122 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.63 46.0 3.21e-01 77.2% 46.3%
3592572 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 40.0 4.00e-01 89.1% 62.5%
3415405 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.62 47.0 3.09e-01 81.2% 34.8%
5034706 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 35.0 3.96e-01 76.2% 74.7%
3283829 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.61 45.0 3.42e-01 76.2% 69.7%
5047908 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.61 43.0 3.03e-01 74.3% 38.5%
5048376 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 47.0 3.18e-01 85.1% 48.7%
4948943 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 34.0 3.79e-01 90.1% 71.8%
4173092 222.2.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Insertion domain in thioesterase › Insertion domain in thioesterase › FAS1_thioest_ins 0.59 36.0 3.63e-01 97.0% 59.0%
3828738 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.59 37.0 3.21e-01 100.0% 40.6%
4951665 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 45.0 4.48e-01 81.2% 98.1%
3704401 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 37.0 3.55e-01 94.1% 55.7%
4042799 9.1.1.9 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeT 0.58 43.0 3.45e-01 78.2% 65.5%
3391693 11.1.5.67 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CLSTN_C 0.57 39.0 3.45e-01 70.3% 84.7%
4943901 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 3.72e-01 71.3% 95.7%
4199388 504.1.1.1 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.55 44.0 3.93e-01 87.1% 77.9%
3248736 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.54 33.0 3.65e-01 93.1% 76.2%
3286818 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 36.0 3.36e-01 100.0% 53.5%
4017102 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 37.0 3.52e-01 71.3% 77.6%
3943569 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 44.0 3.74e-01 88.1% 89.1%
4990857 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.54 40.0 2.90e-01 79.2% 32.2%
3190012 883.1.1.12 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › DUF5923 0.54 42.0 3.25e-01 83.2% 53.3%
3241166 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 41.0 3.62e-01 83.2% 92.7%
4962934 331.2.1.15 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DUF7845 0.52 37.0 3.26e-01 77.2% 62.5%
3311895 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.51 40.0 3.80e-01 80.2% 94.8%
3259808 11.1.1.45 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.51 36.0 3.29e-01 72.3% 71.1%
4997175 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.51 35.0 3.41e-01 70.3% 89.1%
3489274 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 3.07e-01 73.3% 78.8%
3404065 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.51 32.0 3.48e-01 93.1% 78.8%
3241140 2004.1.1.199 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.50 39.0 2.38e-01 83.2% 54.5%
4932446 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.50 36.0 3.44e-01 84.2% 63.3%