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YP_009226282.1
Arc-VirNC_029103__YP_009226282.1__AXI69-gp59__00059
Identity
- Accession:
- NC_029103 ↗
- Protein ID:
- YP_009226282.1 ↗
- Kingdom:
- archaea
Quality
89.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 67-158
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02511.21 best | Thy1 | 49.0 | 9.00e-13 | 40.2% | 18.9% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4f55A01 | 1.10.10.2520 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cell wall hydrolase SleB, domain 1 | 0.59 | 39.0 | 4.10e-01 | 92.4% | 77.5% |
| 4v1sA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.57 | 44.0 | 3.03e-01 | 85.9% | 69.9% |
| 3kezA01 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 41.0 | 3.11e-01 | 77.2% | 87.7% |
| 1ashA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 43.0 | 3.76e-01 | 100.0% | 54.4% |
| 3grlA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.54 | 45.0 | 2.78e-01 | 93.5% | 58.9% |
| 3feyA02 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 48.0 | 3.79e-01 | 100.0% | 58.3% |
| 2w3cA02 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.53 | 47.0 | 3.36e-01 | 100.0% | 89.2% |
| 4atgA00 | 1.25.40.770 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAF6, C-terminal HEAT repeat domain | 0.53 | 46.0 | 3.70e-01 | 100.0% | 55.4% |
| 1bd3A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 47.0 | 3.54e-01 | 100.0% | 90.2% |
| 2e55A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 46.0 | 3.59e-01 | 100.0% | 95.7% |
| 4hbdA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.52 | 44.0 | 3.31e-01 | 96.7% | 51.8% |
| 1o82A00 | 1.20.225.10 | Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 | 0.51 | 31.0 | 3.39e-01 | 83.7% | 77.1% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4152367 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.95 | 91.0 | 6.03e-01 | 100.0% | 30.3% |
| 4943595 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.88 | 58.0 | 4.15e-01 | 91.3% | 27.6% |
| 5029299 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.87 | 47.0 | 3.48e-01 | 97.8% | 23.8% |
| 4988219 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.87 | 52.0 | 3.66e-01 | 100.0% | 22.4% |
| 4992830 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.83 | 57.0 | 4.11e-01 | 95.7% | 28.4% |
| 5077404 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.83 | 60.0 | 4.24e-01 | 98.9% | 27.8% |
| 4246528 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.83 | 59.0 | 4.21e-01 | 98.9% | 27.9% |
| 4930760 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.64 | 61.0 | 4.23e-01 | 100.0% | 37.7% |
| 3450834 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.63 | 44.0 | 4.43e-01 | 100.0% | 71.3% |
| 5001652 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.63 | 59.0 | 4.15e-01 | 100.0% | 38.8% |
| 3737647 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 46.0 | 3.04e-01 | 100.0% | 19.7% |
| 3513297 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.59 | 42.0 | 4.15e-01 | 75.0% | 94.0% |
| 3534674 | 109.4.1.920 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Maestro_2 | 0.57 | 47.0 | 3.55e-01 | 91.3% | 74.9% |
| 3213149 | 109.4.1.15 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS | 0.56 | 48.0 | 4.08e-01 | 95.7% | 72.9% |
| 3622530 | 109.4.1.59 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF383,DUF384 | 0.56 | 48.0 | 3.28e-01 | 100.0% | 26.3% |
| 3393682 | 109.4.1.1720 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, TPR_IMB1, TPR_IPO5 | 0.55 | 50.0 | 2.90e-01 | 100.0% | 76.0% |
| 4204270 | 109.4.1.59 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF383,DUF384 | 0.55 | 50.0 | 3.30e-01 | 100.0% | 25.3% |
| 3743585 | 109.4.1.1311 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ | 0.55 | 47.0 | 3.46e-01 | 95.7% | 47.6% |
| 3841683 | 109.3.1.163 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 | 0.54 | 46.0 | 3.00e-01 | 95.7% | 34.9% |
| 3168386 | 109.4.1.46 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N | 0.54 | 48.0 | 3.49e-01 | 100.0% | 50.8% |
| 3789099 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 44.0 | 2.96e-01 | 92.4% | 38.3% |
| 3738934 | 109.4.1.15 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS | 0.53 | 44.0 | 3.92e-01 | 96.7% | 77.9% |
| 3303057 | 109.4.1.761 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Telomere_reg-2 | 0.53 | 45.0 | 3.12e-01 | 95.7% | 54.2% |
| 4017036 | 109.4.1.1363 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, TPR_IMB1 | 0.52 | 45.0 | 3.15e-01 | 95.7% | 38.0% |
| 3718261 | 109.4.1.441 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TFCD_C | 0.52 | 43.0 | 3.03e-01 | 100.0% | 28.1% |
| 3881283 | 109.4.1.2008 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, Cnd1, HEAT_EZ | 0.52 | 45.0 | 3.42e-01 | 95.7% | 57.7% |
| 3413742 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 43.0 | 3.73e-01 | 92.4% | 65.5% |
| 3476380 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 45.0 | 2.93e-01 | 100.0% | 38.2% |
| 3584050 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 45.0 | 3.24e-01 | 95.7% | 42.0% |
D2
medium
residues 1-64
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02511.21 best | Thy1 | 52.4 | 7.90e-14 | 98.4% | 29.3% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kq4A00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.84 | 70.0 | 4.78e-01 | 89.1% | 33.0% |
| 4p5aC00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.81 | 71.0 | 4.81e-01 | 95.3% | 73.1% |
| 2c4mA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.76 | 52.0 | 3.10e-01 | 71.9% | 10.4% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.74 | 60.0 | 5.86e-01 | 85.9% | 95.6% |
| 3ah5B00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.69 | 61.0 | 4.25e-01 | 100.0% | 31.9% |
| 2wvxA04 | 1.20.1610.10 | Mainly Alpha › Up-down Bundle › Glycosyl hydrolase family fold › alpha-1,2-mannosidases domains | 0.61 | 42.0 | 3.05e-01 | 71.9% | 29.5% |
| 2r0bA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.56 | 41.0 | 3.13e-01 | 79.7% | 45.0% |
| 2r7cA02 | 3.30.428.20 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain | 0.53 | 42.0 | 3.07e-01 | 84.4% | 43.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5069296 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.88 | 72.0 | 4.68e-01 | 89.1% | 22.0% |
| 5077404 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.88 | 78.0 | 5.04e-01 | 93.8% | 24.5% |
| 4992830 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.87 | 74.0 | 4.95e-01 | 92.2% | 28.0% |
| 4943595 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.86 | 74.0 | 4.94e-01 | 93.8% | 26.2% |
| 4152367 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.86 | 75.0 | 4.69e-01 | 93.8% | 36.5% |
| 5066566 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.86 | 73.0 | 4.94e-01 | 92.2% | 32.7% |
| 4982008 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.86 | 71.0 | 4.90e-01 | 89.1% | 28.5% |
| 4933142 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.85 | 74.0 | 4.93e-01 | 93.8% | 26.1% |
| 4955043 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.85 | 69.0 | 5.17e-01 | 89.1% | 37.3% |
| 4930760 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.84 | 76.0 | 4.90e-01 | 96.9% | 24.6% |
| 4988219 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.83 | 71.0 | 4.67e-01 | 93.8% | 35.6% |
| 4133204 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.82 | 74.0 | 4.86e-01 | 96.9% | 27.1% |
| 4102574 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.82 | 73.0 | 4.85e-01 | 96.9% | 35.0% |
| 4933143 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.82 | 72.0 | 4.97e-01 | 95.3% | 31.5% |
| 5046119 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.81 | 70.0 | 4.81e-01 | 93.8% | 28.8% |
| 3835731 | 365.1.1.1 ↗ | few secondary structure elements › Crambin-like › Crambin-like › Crambin-like › Thionin | 0.72 | 41.0 | 4.83e-01 | 84.4% | 80.0% |
| 4300356 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.72 | 62.0 | 4.37e-01 | 100.0% | 31.0% |
| 4679571 | 140.1.1.8 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g,Anticodon_3 | 0.59 | 52.0 | 3.57e-01 | 98.4% | 57.9% |
| 5017168 | 140.1.1.15 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g | 0.59 | 52.0 | 3.57e-01 | 98.4% | 57.9% |