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YP_009226294.1
Arc-VirNC_029103__YP_009226294.1__AXI69-gp71__00071
Identity
- Accession:
- NC_029103 ↗
- Protein ID:
- YP_009226294.1 ↗
- Kingdom:
- archaea
Quality
83.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 50-74_76-77_79-80_85-86_88-89_91-93_103-104_106-111_113-116
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cu3A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.77 | 54.0 | 3.72e-01 | 75.0% | 34.0% |
| 2mj7A00 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.76 | 53.0 | 3.79e-01 | 75.0% | 31.2% |
| 4fczA00 | 3.10.450.710 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC | 0.76 | 53.0 | 3.55e-01 | 75.0% | 25.7% |
| 6xmtA02 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.67 | 53.0 | 3.69e-01 | 89.6% | 48.8% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.66 | 46.0 | 3.31e-01 | 75.0% | 32.7% |
| 3lhnA00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.66 | 46.0 | 3.55e-01 | 72.9% | 43.9% |
| 3fcyA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.63 | 45.0 | 2.79e-01 | 79.2% | 25.6% |
| 2ehgA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.63 | 51.0 | 3.66e-01 | 93.8% | 91.3% |
| 1vw4502 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 44.0 | 3.52e-01 | 75.0% | 45.7% |
| 4h63Q04 | 3.90.1150.120 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.61 | 48.0 | 3.82e-01 | 95.8% | 48.3% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.60 | 42.0 | 3.63e-01 | 75.0% | 62.0% |
| 4c0tA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 43.0 | 3.62e-01 | 83.3% | 93.5% |
| 1hh2P03 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.58 | 42.0 | 3.60e-01 | 77.1% | 69.6% |
| 1xfsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 47.0 | 3.37e-01 | 93.8% | 34.4% |
| 4emtA02 | 3.40.50.12100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein | 0.58 | 41.0 | 3.01e-01 | 75.0% | 62.7% |
| 2oc3A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.58 | 50.0 | 3.10e-01 | 100.0% | 48.0% |
| 6krwA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 49.0 | 3.04e-01 | 100.0% | 46.5% |
| 4ntqB00 | 3.30.2450.20 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.57 | 40.0 | 2.89e-01 | 75.0% | 46.2% |
| 4i8oA01 | 3.30.310.240 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain | 0.56 | 42.0 | 3.52e-01 | 83.3% | 48.3% |
| 4o38A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 39.0 | 3.25e-01 | 79.2% | 92.7% |
| 1eazA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 44.0 | 3.48e-01 | 89.6% | 78.6% |
| 2nysA00 | 2.30.30.220 | Mainly Beta › Roll › SH3 type barrels. › SspB-like | 0.54 | 36.0 | 2.81e-01 | 70.8% | 28.2% |
| 6f7bA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.54 | 45.0 | 2.87e-01 | 100.0% | 69.5% |
| 1nqzA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 36.0 | 2.51e-01 | 75.0% | 19.9% |
| 3kulA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 35.0 | 3.09e-01 | 75.0% | 87.6% |
| 1d6uA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.51 | 39.0 | 2.40e-01 | 95.8% | 98.0% |
| 2fsdA00 | 2.60.40.2460 | Mainly Beta › Sandwich › Immunoglobulin-like › Phage bIL170 RBP, head domain | 0.51 | 42.0 | 3.26e-01 | 95.8% | 88.2% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 36.0 | 3.01e-01 | 85.4% | 61.1% |
| 4fr4D01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 36.0 | 2.76e-01 | 79.2% | 64.3% |
| 5jzjA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 36.0 | 3.07e-01 | 81.2% | 85.1% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3614684 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.74 | 52.0 | 3.72e-01 | 75.0% | 48.6% |
| 3749979 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.73 | 52.0 | 4.15e-01 | 75.0% | 45.6% |
| 3219435 | 243.1.1.75 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 | 0.72 | 53.0 | 3.49e-01 | 79.2% | 24.7% |
| 420412 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.69 | 48.0 | 3.52e-01 | 75.0% | 34.1% |
| 5047299 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 44.0 | 4.70e-01 | 75.0% | 75.0% |
| 3590843 | 223.3.1.2 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S11 | 0.67 | 47.0 | 3.34e-01 | 75.0% | 32.7% |
| 3723379 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.67 | 51.0 | 3.54e-01 | 85.4% | 60.6% |
| 4311344 | 4252.1.1.13 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › PF27123 | 0.66 | 56.0 | 4.28e-01 | 97.9% | 85.2% |
| 3234839 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.66 | 52.0 | 3.18e-01 | 87.5% | 19.7% |
| 3219432 | 243.1.1.75 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 | 0.65 | 47.0 | 3.53e-01 | 77.1% | 40.0% |
| 3518991 | 284.1.3.4 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK | 0.65 | 45.0 | 3.96e-01 | 75.0% | 56.0% |
| 5037697 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.64 | 57.0 | 3.60e-01 | 100.0% | 85.7% |
| 3580028 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.63 | 50.0 | 3.33e-01 | 87.5% | 29.5% |
| 3816360 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.59 | 49.0 | 3.08e-01 | 100.0% | 65.8% |
| 3343188 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.59 | 44.0 | 3.14e-01 | 79.2% | 82.9% |
| 4382028 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 40.0 | 4.20e-01 | 81.2% | 87.5% |
| 3583473 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.58 | 50.0 | 3.05e-01 | 100.0% | 41.9% |
| 5001360 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 46.0 | 2.77e-01 | 95.8% | 14.3% |
| 3573161 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.56 | 48.0 | 2.88e-01 | 100.0% | 33.6% |
| 3921621 | 2003.1.5.359 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth, Methyltransf_25 | 0.56 | 47.0 | 2.70e-01 | 100.0% | 20.8% |
| 4488006 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.56 | 48.0 | 3.01e-01 | 100.0% | 50.2% |
| 3619859 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.55 | 39.0 | 2.99e-01 | 75.0% | 86.7% |
| 5045172 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.55 | 45.0 | 2.85e-01 | 100.0% | 88.4% |
| 3750184 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.55 | 35.0 | 2.98e-01 | 75.0% | 41.3% |
| 3203375 | 219.1.1.129 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF7770 | 0.55 | 42.0 | 3.13e-01 | 85.4% | 47.7% |
| 3564671 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.54 | 44.0 | 2.72e-01 | 100.0% | 46.8% |
| 3922621 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 42.0 | 2.68e-01 | 100.0% | 55.3% |
| 3696503 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 41.0 | 2.62e-01 | 100.0% | 59.1% |
| 4614883 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.52 | 36.0 | 3.08e-01 | 75.0% | 60.0% |
| 3498844 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.51 | 41.0 | 2.57e-01 | 100.0% | 62.4% |
| 3586372 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.51 | 40.0 | 2.61e-01 | 100.0% | 73.5% |
| 3352712 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 41.0 | 2.60e-01 | 100.0% | 68.4% |
| 3198158 | 206.1.1.83 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1, PK_Tyr_Ser-Thr | 0.51 | 41.0 | 2.53e-01 | 100.0% | 63.3% |
| 3902368 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 40.0 | 2.32e-01 | 100.0% | 23.5% |
| 3498417 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 41.0 | 2.58e-01 | 100.0% | 42.5% |
| 4807636 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 40.0 | 2.54e-01 | 100.0% | 56.8% |
| 3401768 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.50 | 40.0 | 2.54e-01 | 100.0% | 93.7% |
| 3867732 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.50 | 39.0 | 2.48e-01 | 100.0% | 61.1% |