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YP_009226302.1
Arc-VirNC_029103__YP_009226302.1__AXI69-gp79__00079
Identity
- Accession:
- NC_029103 ↗
- Protein ID:
- YP_009226302.1 ↗
- Kingdom:
- archaea
Quality
92.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-112
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06939.17 best | DUF1286 | 76.0 | 3.90e-21 | 95.5% | 75.0% |
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 44.0 | 3.84e-01 | 100.0% | 40.6% |
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.70 | 58.0 | 5.37e-01 | 98.9% | 71.8% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 46.0 | 5.09e-01 | 89.9% | 100.0% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.64 | 51.0 | 5.09e-01 | 100.0% | 85.1% |
| 3mxtA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.63 | 40.0 | 3.85e-01 | 73.0% | 57.0% |
| 1vs5O00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.61 | 41.0 | 4.13e-01 | 78.7% | 69.3% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.61 | 53.0 | 4.37e-01 | 100.0% | 80.1% |
| 6hwjA01 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.61 | 53.0 | 3.93e-01 | 98.9% | 74.2% |
| 6tqfA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.61 | 54.0 | 3.53e-01 | 100.0% | 76.2% |
| 1orsC00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.59 | 41.0 | 3.61e-01 | 70.8% | 87.1% |
| 4hiaA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 52.0 | 4.16e-01 | 97.8% | 58.5% |
| 2x2vA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.59 | 39.0 | 4.39e-01 | 86.5% | 89.7% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.58 | 49.0 | 4.92e-01 | 100.0% | 93.5% |
| 2gs4A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 44.0 | 3.65e-01 | 80.9% | 84.2% |
| 2hjmA01 | 1.20.120.460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like | 0.57 | 44.0 | 4.46e-01 | 83.1% | 83.7% |
| 8gr2A01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.57 | 41.0 | 3.24e-01 | 88.8% | 34.9% |
| 6bfnB02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.57 | 46.0 | 3.62e-01 | 91.0% | 85.1% |
| 1a00B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 49.0 | 4.25e-01 | 100.0% | 96.6% |
| 3k4oA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.56 | 50.0 | 3.59e-01 | 98.9% | 60.0% |
| 5af7B03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.56 | 42.0 | 3.58e-01 | 79.8% | 89.9% |
| 2cfqA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.56 | 49.0 | 3.81e-01 | 100.0% | 76.6% |
| 4x28C03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.56 | 44.0 | 3.73e-01 | 84.3% | 90.9% |
| 2rt6A00 | 1.20.1270.340 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 36.0 | 3.56e-01 | 94.4% | 61.2% |
| 1ivhA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 41.0 | 3.58e-01 | 79.8% | 93.6% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 47.0 | 4.13e-01 | 100.0% | 94.2% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 3.28e-01 | 70.8% | 97.7% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.54 | 46.0 | 3.07e-01 | 100.0% | 37.9% |
| 2c41C01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 42.0 | 3.57e-01 | 85.4% | 87.9% |
| 2hfiA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.53 | 44.0 | 3.95e-01 | 89.9% | 66.7% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 41.0 | 3.64e-01 | 85.4% | 87.4% |
| 3rklA00 | 6.10.140.1640 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 35.0 | 3.69e-01 | 95.5% | 76.2% |
| 1sj7C00 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.52 | 41.0 | 3.36e-01 | 84.3% | 48.2% |
| 1adeA02 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.52 | 44.0 | 4.32e-01 | 95.5% | 91.0% |
| 3ay5A01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.52 | 41.0 | 3.65e-01 | 87.6% | 58.6% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 41.0 | 4.37e-01 | 97.8% | 98.7% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 38.0 | 3.65e-01 | 78.7% | 68.0% |
| 2lseA00 | 1.20.120.1360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 38.0 | 3.65e-01 | 78.7% | 88.1% |
| 1vw4T01 | 6.10.330.20 | Special › Helix non-globular › Monooxygenase › | 0.50 | 40.0 | 3.73e-01 | 97.8% | 67.9% |
| 3fgrA02 | 1.10.439.20 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 | 0.50 | 38.0 | 3.37e-01 | 79.8% | 70.3% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3236092 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.73 | 52.0 | 5.48e-01 | 96.6% | 83.7% |
| 4963438 | 604.39.1.17 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › DUF2238 | 0.71 | 64.0 | 5.50e-01 | 100.0% | 63.6% |
| 3423437 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 63.0 | 5.11e-01 | 100.0% | 57.0% |
| 5047419 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.70 | 62.0 | 5.15e-01 | 100.0% | 63.1% |
| 4958276 | 1075.5.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt | 0.69 | 62.0 | 4.73e-01 | 100.0% | 48.1% |
| 5051281 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.69 | 61.0 | 4.62e-01 | 98.9% | 69.8% |
| 4552859 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.68 | 61.0 | 4.55e-01 | 100.0% | 82.2% |
| 3171534 | 3470.1.1.46 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › VanZ | 0.67 | 58.0 | 5.67e-01 | 98.9% | 90.9% |
| 4065938 | 604.39.1.3 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF-ribofla_trS | 0.67 | 59.0 | 4.77e-01 | 100.0% | 77.7% |
| 4075906 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.66 | 59.0 | 4.14e-01 | 98.9% | 62.2% |
| 3811948 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.65 | 42.0 | 4.68e-01 | 75.3% | 84.3% |
| 5001408 | 4995.1.1.0 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like | 0.65 | 49.0 | 4.82e-01 | 97.8% | 74.0% |
| 3788953 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.65 | 45.0 | 4.49e-01 | 70.8% | 70.0% |
| 3328315 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.65 | 57.0 | 4.79e-01 | 98.9% | 58.1% |
| 3941265 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.65 | 46.0 | 3.85e-01 | 75.3% | 94.4% |
| 4973788 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.65 | 55.0 | 4.76e-01 | 96.6% | 60.7% |
| 4997099 | 604.39.1.27 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › MASE1 | 0.64 | 56.0 | 4.44e-01 | 98.9% | 75.3% |
| 3783474 | 604.12.1.71 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › TMD_POM152 | 0.64 | 52.0 | 4.82e-01 | 88.8% | 76.5% |
| 5044572 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.63 | 54.0 | 5.19e-01 | 96.6% | 93.3% |
| 3225207 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.63 | 46.0 | 3.80e-01 | 77.5% | 95.8% |
| 5068349 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.63 | 47.0 | 4.23e-01 | 78.7% | 65.0% |
| 3276877 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.62 | 51.0 | 5.18e-01 | 96.6% | 92.2% |
| 3600217 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.61 | 45.0 | 3.28e-01 | 77.5% | 32.4% |
| 4983690 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.61 | 54.0 | 3.73e-01 | 100.0% | 60.3% |
| 3563412 | 5050.1.1.10 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 | 0.60 | 55.0 | 3.94e-01 | 100.0% | 39.6% |
| 3739839 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.60 | 48.0 | 4.50e-01 | 87.6% | 81.8% |
| 4088719 | 3579.1.1.13 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › PhaG_MnhG_YufB | 0.57 | 42.0 | 3.95e-01 | 83.1% | 61.9% |
| 4499656 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.57 | 43.0 | 3.74e-01 | 84.3% | 51.4% |
| 3737956 | 601.19.1.18 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Mmc1_C | 0.57 | 48.0 | 3.82e-01 | 96.6% | 51.3% |
| 4887090 | 3834.1.1.1 ↗ | alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA_TcB_BD | 0.56 | 33.0 | 2.23e-01 | 86.5% | 14.7% |
| 1557939 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.55 | 42.0 | 3.49e-01 | 80.9% | 85.0% |
| 3996787 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.54 | 42.0 | 3.50e-01 | 84.3% | 90.9% |
| 4954986 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.54 | 47.0 | 3.27e-01 | 100.0% | 87.1% |
| 3417291 | 109.4.1.359 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C | 0.54 | 47.0 | 2.96e-01 | 98.9% | 17.5% |
| 4997872 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.54 | 40.0 | 3.69e-01 | 77.5% | 93.8% |
| 4480963 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.54 | 42.0 | 3.99e-01 | 84.3% | 72.4% |
| 3268588 | 604.6.1.22 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › EMC4 | 0.54 | 47.0 | 4.41e-01 | 98.9% | 80.0% |
| 3391090 | 7004.1.1.0 ↗ | 0.54 | 40.0 | 3.99e-01 | 95.5% | 74.7% | |
| 4014279 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 43.0 | 3.55e-01 | 88.8% | 64.2% |
| 3619687 | 604.1.1.127 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › EMC4 | 0.53 | 46.0 | 4.36e-01 | 98.9% | 80.9% |
| 3356899 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 44.0 | 3.42e-01 | 91.0% | 53.0% |
| 3928597 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.51 | 42.0 | 3.66e-01 | 89.9% | 86.4% |
| 3683615 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.51 | 42.0 | 3.14e-01 | 93.3% | 35.9% |
| 5024558 | 2004.1.1.53 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Adenylsucc_synt | 0.50 | 44.0 | 2.88e-01 | 100.0% | 20.7% |
| 3977923 | 633.6.1.10 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACDH_C | 0.50 | 41.0 | 3.15e-01 | 92.1% | 48.4% |