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YP_009226306.1

Arc-Vir

NC_029103__YP_009226306.1__AXI69-gp83__00083

Identity

Accession:: NC_029103 ↗
Protein ID:: YP_009226306.1 ↗
Kingdom:: archaea

Quality

92.5 mean pLDDT

Taxonomy

Bicaudaviridae› Sulfolobus_monocaudavirus_SMV3

TaxID: 1732177

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-65

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2nogB02	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.63	49.0	4.88e-01	100.0%	81.4%
2l01A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.61	49.0	4.69e-01	89.2%	77.9%
3bujA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.60	50.0	3.20e-01	100.0%	66.5%
1sqgA01	1.10.940.10	Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like	0.56	49.0	3.88e-01	100.0%	58.2%
3f4mA00	1.20.1440.160	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like	0.55	44.0	3.42e-01	89.2%	96.8%
1fc6A01	3.30.750.44	Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA ›	0.55	36.0	3.20e-01	75.4%	44.9%
4d8mA01	1.20.190.10	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain	0.54	40.0	2.84e-01	81.5%	38.9%
6vudA01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.54	43.0	3.71e-01	90.8%	85.3%
3kfwX03	1.20.58.1460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	37.0	3.57e-01	75.4%	73.7%
2jbwA01	1.20.1440.110	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase	0.52	41.0	3.62e-01	89.2%	65.0%
3ddhA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.52	40.0	3.82e-01	86.2%	90.1%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3927802	198.1.1.1 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2	0.70	58.0	5.45e-01	98.5%	76.2%
3789410	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.61	48.0	4.70e-01	100.0%	82.9%
3964125	101.1.1.248 ↗	alpha arrays › HTH › HTH › Three-helical HTH › DUF772	0.60	51.0	4.21e-01	100.0%	60.8%
3740780	604.12.1.2 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1	0.53	41.0	3.99e-01	86.2%	90.7%
4028661	650.1.1.1 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ	0.52	42.0	3.67e-01	95.4%	64.5%

D2 medium residues 129-162_227-267

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7vb8A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	44.0	3.87e-01	88.0%	63.7%
3up9A01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.53	40.0	3.30e-01	90.7%	44.2%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4929586	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	45.0	4.37e-01	93.3%	95.3%
3499511	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	44.0	3.92e-01	92.0%	80.0%
4929672	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	45.0	3.92e-01	97.3%	70.8%