←Back to structures
NC_029119.1__YP_009226683.1__AXJ01_gp007__00007
Bact-VirNC_029119.1__YP_009226683.1__AXJ01_gp007__00007
Identity
- Accession:
- NC_029119 ↗
- Kingdom:
- phage
Quality
85.5
mean pLDDT
Taxonomy
TaxID: 1732063
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-142
Domain cluster:
rep: lef-3__YP_009186752__Sucra_jujuba_nucleopolyhedrovirus__1563660__D307-415
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27337.1 best | YorF | 101.1 | 1.00e-28 | 100.0% | 46.2% |
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f2bA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.87 | 55.0 | 6.43e-01 | 94.0% | 88.5% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.84 | 59.0 | 6.67e-01 | 93.2% | 93.1% |
| 1ue6D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.83 | 58.0 | 6.56e-01 | 95.5% | 91.3% |
| 4me3A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.80 | 50.0 | 5.83e-01 | 94.0% | 86.6% |
| 2k5vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.79 | 50.0 | 5.72e-01 | 94.7% | 85.7% |
| 4gs3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.78 | 51.0 | 6.13e-01 | 94.7% | 97.8% |
| 2vw9B00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 58.0 | 6.54e-01 | 93.2% | 98.1% |
| 3f1zI00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 49.0 | 5.21e-01 | 92.5% | 72.4% |
| 1fguB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 55.0 | 5.72e-01 | 100.0% | 78.2% |
| 3k7uC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 53.0 | 6.17e-01 | 94.7% | 95.9% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 55.0 | 5.98e-01 | 94.7% | 88.3% |
| 3ulpD00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 59.0 | 6.38e-01 | 94.0% | 94.7% |
| 2cwaA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.74 | 57.0 | 6.33e-01 | 100.0% | 97.2% |
| 6rupA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.74 | 56.0 | 6.13e-01 | 94.0% | 94.6% |
| 3u4vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 49.0 | 5.28e-01 | 95.5% | 78.4% |
| 2vl6A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.72 | 52.0 | 5.68e-01 | 93.2% | 88.4% |
| 8aa9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.72 | 53.0 | 5.64e-01 | 100.0% | 88.6% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.70 | 51.0 | 5.55e-01 | 94.7% | 90.9% |
| 3f6gA02 | 3.30.160.340 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 31.0 | 4.53e-01 | 96.2% | 96.8% |
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.65 | 24.0 | 3.99e-01 | 94.7% | 97.8% |
| 1xjvA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 51.0 | 5.05e-01 | 99.2% | 83.8% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 28.0 | 3.62e-01 | 87.2% | 77.3% |
| 3nqzA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 29.0 | 3.55e-01 | 87.2% | 75.0% |
| 1ae2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 36.0 | 4.30e-01 | 93.2% | 100.0% |
| 4hceA00 | 2.40.50.860 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 46.0 | 4.69e-01 | 93.2% | 91.5% |
| 1f9cA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 39.0 | 4.12e-01 | 74.4% | 95.1% |
| 1qhlA00 | 3.40.1140.10 | Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › | 0.52 | 38.0 | 3.34e-01 | 76.7% | 59.1% |
| 2ciuA00 | 3.10.450.320 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 | 0.50 | 36.0 | 3.77e-01 | 89.5% | 79.7% |
| 1wlgA02 | 2.60.98.20 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE | 0.50 | 31.0 | 3.10e-01 | 86.5% | 57.9% |
ECOD (69)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4137219 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.85 | 62.0 | 7.07e-01 | 94.0% | 98.0% |
| 159268 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.83 | 58.0 | 4.90e-01 | 94.7% | 46.1% |
| 3375524 | 2.1.1.229 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 | 0.82 | 59.0 | 6.24e-01 | 95.5% | 81.7% |
| 4680392 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.82 | 60.0 | 6.64e-01 | 95.5% | 91.8% |
| 2541776 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.80 | 57.0 | 6.28e-01 | 94.0% | 89.0% |
| 4277262 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.80 | 60.0 | 6.42e-01 | 94.7% | 87.3% |
| 3604100 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 58.0 | 5.07e-01 | 100.0% | 52.4% |
| 4170378 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.79 | 59.0 | 6.36e-01 | 94.0% | 89.6% |
| 3839607 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.78 | 60.0 | 6.38e-01 | 94.7% | 89.0% |
| 4047115 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.78 | 57.0 | 6.41e-01 | 94.0% | 99.0% |
| 152653 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.78 | 51.0 | 6.13e-01 | 94.7% | 97.8% |
| 2330653 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.78 | 50.0 | 5.93e-01 | 94.0% | 92.6% |
| 5076489 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.77 | 54.0 | 5.77e-01 | 96.2% | 82.6% |
| 3814285 | 2.1.1.229 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 | 0.77 | 58.0 | 6.29e-01 | 97.0% | 94.5% |
| 3616890 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.76 | 58.0 | 6.25e-01 | 96.2% | 91.3% |
| 4044404 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.76 | 58.0 | 6.54e-01 | 94.0% | 100.0% |
| 3882652 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 57.0 | 5.75e-01 | 99.2% | 78.5% |
| 3924081 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.76 | 59.0 | 5.78e-01 | 94.7% | 75.7% |
| 3542604 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.75 | 56.0 | 5.60e-01 | 99.2% | 75.6% |
| 5037168 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.75 | 58.0 | 5.99e-01 | 94.7% | 84.8% |
| 4956351 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.75 | 51.0 | 3.38e-01 | 95.5% | 19.0% |
| 5060038 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.74 | 52.0 | 5.62e-01 | 97.7% | 83.5% |
| 3582952 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.74 | 54.0 | 5.24e-01 | 99.2% | 68.3% |
| 4942779 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.74 | 53.0 | 5.68e-01 | 93.2% | 84.3% |
| 3667340 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.74 | 54.0 | 5.57e-01 | 94.7% | 79.2% |
| 3448049 | 2.1.1.229 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 | 0.74 | 54.0 | 6.11e-01 | 96.2% | 95.2% |
| 5076488 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 49.0 | 5.58e-01 | 92.5% | 89.0% |
| 3262463 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.74 | 53.0 | 5.27e-01 | 99.2% | 70.7% |
| 3741507 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.74 | 53.0 | 6.01e-01 | 94.7% | 99.0% |
| 5035945 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.73 | 51.0 | 5.49e-01 | 96.2% | 82.6% |
| 4025160 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.73 | 60.0 | 6.19e-01 | 94.7% | 90.4% |
| 4982481 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 46.0 | 5.39e-01 | 92.5% | 90.5% |
| 3215667 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.72 | 57.0 | 6.00e-01 | 95.5% | 90.0% |
| 3666655 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 55.0 | 5.73e-01 | 99.2% | 84.8% |
| 3690510 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.72 | 53.0 | 5.75e-01 | 94.0% | 91.8% |
| 4026722 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.72 | 54.0 | 5.36e-01 | 99.2% | 74.3% |
| 3367063 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.72 | 55.0 | 4.51e-01 | 99.2% | 44.6% |
| 4028113 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.72 | 54.0 | 5.36e-01 | 99.2% | 74.3% |
| 3350247 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.72 | 55.0 | 5.40e-01 | 99.2% | 73.8% |
| 3219203 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.72 | 52.0 | 5.22e-01 | 99.2% | 74.1% |
| 3610887 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 52.0 | 5.56e-01 | 100.0% | 87.0% |
| 4084495 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.71 | 52.0 | 5.81e-01 | 96.2% | 96.2% |
| 3995685 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.71 | 54.0 | 5.85e-01 | 94.7% | 95.4% |
| 3876051 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.71 | 42.0 | 5.16e-01 | 91.0% | 91.8% |
| 3365669 | 2.1.1.229 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 | 0.71 | 52.0 | 5.64e-01 | 96.2% | 91.8% |
| 3662669 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.71 | 56.0 | 5.37e-01 | 99.2% | 73.3% |
| 3700294 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 51.0 | 5.31e-01 | 97.7% | 80.0% |
| 3508573 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 43.0 | 4.76e-01 | 96.2% | 76.2% |
| 3625857 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.70 | 52.0 | 5.25e-01 | 97.7% | 77.7% |
| 3542606 | 2.1.1.176 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_MEIOB_N | 0.70 | 58.0 | 5.72e-01 | 99.2% | 82.9% |
| 3659298 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.69 | 55.0 | 5.12e-01 | 98.5% | 67.3% |
| 3412139 | 2.1.1.176 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_MEIOB_N | 0.68 | 58.0 | 5.67e-01 | 99.2% | 82.1% |
| 3807621 | 2.1.1.348 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223, Rep-A_N | 0.68 | 51.0 | 4.01e-01 | 100.0% | 37.8% |
| 3612666 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 52.0 | 5.30e-01 | 95.5% | 81.5% |
| 3271375 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 60.0 | 5.34e-01 | 100.0% | 68.9% |
| 4958552 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 38.0 | 4.09e-01 | 97.7% | 64.3% |
| 3583095 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 47.0 | 5.36e-01 | 94.7% | 97.0% |
| 3508135 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.66 | 40.0 | 4.96e-01 | 76.7% | 100.0% |
| 3491964 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 59.0 | 6.05e-01 | 97.0% | 96.9% |
| 3393168 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 42.0 | 4.57e-01 | 97.0% | 78.2% |
| 3492348 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.63 | 42.0 | 4.13e-01 | 97.0% | 61.4% |
| 3252847 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 38.0 | 4.49e-01 | 90.2% | 95.3% |
| 3250428 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 38.0 | 3.71e-01 | 91.0% | 57.2% |
| 4937519 | 2.1.1.135 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 | 0.59 | 40.0 | 4.20e-01 | 91.0% | 75.8% |
| 3368394 | 4325.1.1.11 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF27041 | 0.57 | 32.0 | 3.72e-01 | 92.5% | 75.8% |
| 3474148 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 40.0 | 4.20e-01 | 97.0% | 78.3% |
| 3443030 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 29.0 | 3.71e-01 | 86.5% | 83.7% |
| 5022744 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.51 | 33.0 | 3.32e-01 | 87.2% | 64.4% |
| 3609908 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 32.0 | 3.55e-01 | 97.0% | 78.2% |
D2
high
residues 144-284
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27337.1 best | YorF | 89.8 | 2.90e-25 | 100.0% | 50.5% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z9fA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.84 | 49.0 | 6.23e-01 | 79.4% | 93.3% |
| 3kojB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.82 | 49.0 | 6.13e-01 | 78.0% | 93.3% |
| 2cwaA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.81 | 55.0 | 6.20e-01 | 92.2% | 89.0% |
| 4gs3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.80 | 49.0 | 6.10e-01 | 84.4% | 96.7% |
| 4damC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 51.0 | 6.01e-01 | 85.8% | 95.0% |
| 3k7uC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 51.0 | 6.06e-01 | 81.6% | 96.9% |
| 1ue6D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 51.0 | 5.87e-01 | 82.3% | 92.3% |
| 3rd4B00 | 2.40.50.660 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.74 | 42.0 | 5.43e-01 | 80.1% | 97.6% |
| 4b08A01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.72 | 41.0 | 5.36e-01 | 85.1% | 98.8% |
| 1fguB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.70 | 51.0 | 5.43e-01 | 92.2% | 84.7% |
| 2hqlA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 42.0 | 5.10e-01 | 78.0% | 97.8% |
| 3nppA00 | 2.40.50.480 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 | 0.62 | 37.0 | 4.42e-01 | 90.1% | 92.0% |
| 3kf8A00 | 2.40.50.1040 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 46.0 | 4.05e-01 | 85.1% | 53.1% |
| 1xjvA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 50.0 | 4.99e-01 | 92.2% | 87.3% |
| 2k5wA00 | 2.40.50.480 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 | 0.59 | 40.0 | 4.47e-01 | 90.1% | 89.2% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 25.0 | 3.37e-01 | 94.3% | 74.7% |
| 2qw7C00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.57 | 38.0 | 4.50e-01 | 83.7% | 100.0% |
| 2kr0A01 | 2.30.29.70 | Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 | 0.55 | 28.0 | 3.07e-01 | 80.9% | 56.6% |
| 5i4nA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 30.0 | 3.64e-01 | 78.0% | 91.3% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 152653 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.80 | 49.0 | 6.10e-01 | 84.4% | 96.7% |
| 4002116 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 47.0 | 4.73e-01 | 85.1% | 60.7% |
| 3375524 | 2.1.1.229 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 | 0.76 | 52.0 | 5.70e-01 | 82.3% | 82.5% |
| 5058885 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 49.0 | 4.67e-01 | 85.1% | 58.1% |
| 4047115 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.74 | 50.0 | 5.98e-01 | 79.4% | 98.0% |
| 4032979 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.74 | 51.0 | 5.80e-01 | 80.1% | 90.9% |
| 4232994 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.73 | 51.0 | 5.79e-01 | 80.9% | 90.9% |
| 3705888 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 47.0 | 5.15e-01 | 80.9% | 78.3% |
| 3814285 | 2.1.1.229 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 | 0.73 | 54.0 | 6.13e-01 | 87.2% | 97.3% |
| 3208585 | 2.1.1.59 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1 | 0.73 | 43.0 | 5.11e-01 | 79.4% | 84.0% |
| 4277262 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.72 | 52.0 | 5.65e-01 | 80.9% | 87.3% |
| 3616890 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.72 | 52.0 | 5.73e-01 | 81.6% | 90.4% |
| 3924081 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.72 | 53.0 | 5.32e-01 | 80.9% | 75.7% |
| 4170378 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.71 | 51.0 | 5.61e-01 | 80.1% | 89.6% |
| 4593266 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.70 | 33.0 | 4.44e-01 | 76.6% | 84.0% |
| 5054128 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 49.0 | 5.37e-01 | 92.9% | 87.0% |
| 3839607 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.70 | 51.0 | 5.56e-01 | 80.9% | 89.0% |
| 3518490 | 2.1.1.110 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › BRCA2DBD_OB2 | 0.70 | 49.0 | 5.40e-01 | 91.5% | 87.8% |
| 3594959 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.70 | 45.0 | 5.04e-01 | 82.3% | 82.7% |
| 3789376 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.70 | 53.0 | 5.51e-01 | 96.5% | 84.6% |
| 4044404 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.69 | 50.0 | 5.80e-01 | 80.1% | 100.0% |
| 4626934 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 49.0 | 5.66e-01 | 80.9% | 97.1% |
| 3965228 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 45.0 | 5.39e-01 | 80.1% | 97.9% |
| 3194612 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.69 | 52.0 | 5.21e-01 | 96.5% | 76.6% |
| 4014971 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 52.0 | 5.41e-01 | 96.5% | 85.4% |
| 294 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.67 | 51.0 | 5.09e-01 | 82.3% | 75.9% |
| 3643736 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.67 | 54.0 | 5.36e-01 | 96.5% | 80.7% |
| 3830552 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 51.0 | 5.13e-01 | 91.5% | 78.6% |
| 3611898 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 46.0 | 4.92e-01 | 83.7% | 80.0% |
| 3667340 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.65 | 46.0 | 4.85e-01 | 81.6% | 80.0% |
| 3722560 | 2.1.1.59 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1 | 0.65 | 46.0 | 4.64e-01 | 85.1% | 73.2% |
| 3716709 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 49.0 | 5.30e-01 | 85.8% | 91.1% |
| 3279068 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 44.0 | 4.98e-01 | 86.5% | 89.1% |
| 3679986 | 2.1.1.305 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C, REPA_OB_2 | 0.64 | 49.0 | 3.74e-01 | 90.8% | 36.4% |
| 3590404 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 46.0 | 5.33e-01 | 83.7% | 100.0% |
| 3701262 | 2.1.1.225 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 | 0.64 | 49.0 | 5.11e-01 | 79.4% | 88.5% |
| 3659298 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.63 | 49.0 | 4.64e-01 | 91.5% | 68.5% |
| 3678038 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.63 | 31.0 | 4.03e-01 | 83.7% | 85.3% |
| 3649749 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.63 | 49.0 | 4.17e-01 | 91.5% | 51.3% |
| 3808110 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.62 | 51.0 | 5.00e-01 | 100.0% | 80.7% |
| 4981345 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.61 | 26.0 | 3.87e-01 | 72.3% | 98.2% |
| 3412139 | 2.1.1.176 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_MEIOB_N | 0.61 | 52.0 | 5.15e-01 | 94.3% | 87.6% |
| 4405256 | 2.1.1.20 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Phage_DNA_bind | 0.60 | 37.0 | 4.58e-01 | 76.6% | 100.0% |
| 3830448 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.60 | 45.0 | 4.53e-01 | 81.6% | 75.2% |
| 3599731 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 48.0 | 4.33e-01 | 86.5% | 64.7% |
| 3588396 | 2.12.1.1 ↗ | beta barrels › OB-fold › BC4932-like › BC4932-like › DUF1093 | 0.57 | 39.0 | 4.39e-01 | 88.7% | 93.3% |
| 3587268 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 42.0 | 4.60e-01 | 80.9% | 95.0% |
| 5029975 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.52 | 28.0 | 3.34e-01 | 75.2% | 76.0% |