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NC_029119.1__YP_009226706.1__AXJ01_gp030__00030

Bact-Vir

NC_029119.1__YP_009226706.1__AXJ01_gp030__00030

Identity

Accession:
NC_029119 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_SPbeta-like

TaxID: 1732063

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-108
PDB
Domain cluster: rep: MK504444.1__QBJ03634.1__UCC3521_0096__00096__D7-98
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00216.27 best Bac_DNA_binding 52.3 7.80e-14 96.1% 96.7%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1owfA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.87 73.0 7.60e-01 99.0% 94.8%
2np2A00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.85 75.0 7.60e-01 99.0% 95.1%
4pt4B00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.85 71.0 7.29e-01 98.1% 92.8%
4n1vA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.77 64.0 6.71e-01 97.1% 95.7%
2ndpA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.76 64.0 6.58e-01 97.1% 92.9%
2iieA01 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.76 66.0 6.53e-01 100.0% 88.9%
4fmrA02 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.73 56.0 6.02e-01 97.1% 94.3%
1wtuA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.68 57.0 5.87e-01 100.0% 93.9%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 32.0 2.85e-01 99.0% 38.5%
7qu8A01 2.60.220.50 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › 0.53 45.0 3.58e-01 93.2% 91.8%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4284216 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.89 76.0 7.89e-01 99.0% 95.8%
4662987 101.17.1.0 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.89 75.0 7.87e-01 99.0% 95.8%
4274974 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.89 75.0 7.68e-01 100.0% 92.0%
4508411 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.88 75.0 7.66e-01 100.0% 92.0%
4088528 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.88 76.0 7.71e-01 100.0% 93.0%
4681823 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.86 72.0 7.34e-01 100.0% 91.0%
3964061 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.85 76.0 7.65e-01 100.0% 94.2%
5073165 101.17.1.0 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.85 69.0 7.39e-01 96.1% 97.8%
222497 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.85 71.0 7.29e-01 98.1% 91.8%
4240651 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.85 70.0 7.19e-01 98.1% 90.0%
4227571 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.84 72.0 7.34e-01 100.0% 93.0%
4051851 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.82 73.0 7.44e-01 97.1% 98.0%
1916727 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.76 64.0 6.58e-01 97.1% 92.9%
3831489 328.7.1.2 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › PF29032 0.69 28.0 3.36e-01 94.2% 54.3%
4941755 101.18.1.0 ↗ alpha arrays › HTH › DNA-binding domain of TraM protein › DNA-binding domain of TraM protein 0.54 37.0 4.06e-01 87.4% 84.7%