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NC_029119.1__YP_009226740.1__AXJ01_gp064__00064

Bact-Vir

NC_029119.1__YP_009226740.1__AXJ01_gp064__00064

Identity

Accession:
NC_029119 ↗
Kingdom:
phage

Quality

85.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_SPbeta-like

TaxID: 1732063

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-156
PDB
Domain cluster: rep: OL774877.1__UJH95051.1__MissG1_0001__00001__D3-139
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05257.23 best CHAP 30.9 4.40e-07 58.2% 90.1%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.99 97.0 9.42e-01 100.0% 95.1%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.71 55.0 5.92e-01 100.0% 94.6%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 27.0 4.12e-01 100.0% 98.4%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.59 31.0 3.68e-01 94.1% 74.3%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 32.0 3.71e-01 73.2% 75.0%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 50.0 3.72e-01 99.3% 91.4%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 32.0 3.80e-01 86.3% 85.0%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.53 35.0 3.98e-01 95.4% 90.1%
2otrA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.51 28.0 3.44e-01 77.8% 86.7%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1293874 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.98 96.0 9.33e-01 100.0% 94.5%
4576823 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.86 76.0 7.71e-01 100.0% 92.7%
4034059 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.85 75.0 7.73e-01 100.0% 95.9%
4030940 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.85 77.0 7.68e-01 100.0% 91.6%
2141406 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.81 65.0 6.97e-01 100.0% 94.8%
4034057 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.77 52.0 6.22e-01 86.3% 100.0%
4031159 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.73 56.0 5.67e-01 95.4% 79.2%
4182884 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.72 52.0 5.94e-01 73.2% 97.4%
3964422 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 61.0 6.05e-01 100.0% 89.4%
3990071 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.68 58.0 6.06e-01 96.7% 97.1%
184711 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.68 51.0 5.10e-01 98.7% 76.1%
3934628 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 34.0 4.22e-01 87.6% 84.4%
3408592 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 37.0 4.33e-01 98.0% 88.0%
3393297 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 32.0 4.20e-01 72.5% 93.8%
4055256 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 33.0 4.08e-01 88.2% 86.7%
3518844 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 32.0 4.13e-01 73.9% 90.6%
3782313 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 30.0 4.22e-01 98.0% 98.7%
3389311 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 35.0 4.18e-01 88.9% 88.0%
3999507 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 27.0 4.02e-01 98.7% 97.1%
3577505 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 31.0 4.04e-01 73.2% 90.6%
3622137 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 32.0 3.97e-01 87.6% 86.7%
3877478 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 33.0 3.96e-01 100.0% 83.0%
3245045 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.59 41.0 3.80e-01 100.0% 55.0%
3881121 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 34.0 4.00e-01 100.0% 87.0%
3558926 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 31.0 3.88e-01 79.1% 88.9%
3407827 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 30.0 3.86e-01 72.5% 91.8%
4974745 219.1.1.153 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N 0.55 50.0 4.65e-01 98.0% 96.8%
160765 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 27.0 3.72e-01 100.0% 94.8%
3619813 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 35.0 3.94e-01 100.0% 87.8%
D2 high residues 180-369
PDB
Domain cluster: rep: term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00301__D1-46_70-101_150-193
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01520.24 best Amidase_3 67.2 2.70e-18 99.5% 96.5%
D3 high residues 403-499
PDB
Domain cluster: rep: MK075005.1__AZB66809.1__X__00063__D215-314
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25606.2 best SH3b_P2 131.9 1.20e-38 100.0% 98.9%