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NC_029119.1__YP_009226771.1__AXJ01_gp095__00095

Bact-Vir

NC_029119.1__YP_009226771.1__AXJ01_gp095__00095

Identity

Accession:
NC_029119 ↗
Kingdom:
phage

Quality

81.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_SPbeta-like

TaxID: 1732063

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-98
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 43.0 5.12e-01 97.8% 88.9%
1so7A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.68 45.0 2.97e-01 98.9% 17.5%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.64 38.0 3.67e-01 100.0% 50.9%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 57.0 5.17e-01 100.0% 94.3%
2arhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 42.0 3.53e-01 98.9% 41.8%
2g30A02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.61 37.0 3.45e-01 100.0% 47.4%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.58 42.0 4.18e-01 93.5% 73.4%
3e5dA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 38.0 3.42e-01 96.7% 49.6%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 31.0 3.67e-01 94.6% 74.2%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 52.0 4.73e-01 100.0% 91.9%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 49.0 4.69e-01 95.7% 97.2%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 49.0 3.25e-01 100.0% 25.2%
3imhA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 48.0 3.40e-01 100.0% 44.0%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 44.0 3.06e-01 100.0% 27.2%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.55 44.0 3.62e-01 89.1% 61.9%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 46.0 3.14e-01 100.0% 26.3%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 38.0 3.39e-01 98.9% 50.4%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 49.0 3.39e-01 100.0% 34.3%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 3.01e-01 100.0% 18.7%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 46.0 3.37e-01 90.2% 70.0%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 36.0 4.05e-01 93.5% 91.4%
4mmhA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 48.0 3.45e-01 100.0% 49.5%
6bu2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 38.0 3.28e-01 98.9% 46.0%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 48.0 3.07e-01 100.0% 39.8%
2v95A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 39.0 3.46e-01 77.2% 86.8%
2xe4A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.52 41.0 2.79e-01 85.9% 96.3%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.91e-01 89.1% 82.6%
2oayA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 39.0 3.13e-01 80.4% 88.9%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 45.0 3.31e-01 100.0% 35.9%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.97e-01 100.0% 84.1%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 2.93e-01 91.3% 27.3%
6igbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 3.01e-01 100.0% 26.7%
1imvA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 38.0 3.06e-01 78.3% 78.1%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 46.0 3.13e-01 100.0% 38.7%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.50 45.0 3.57e-01 100.0% 66.5%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 45.0 2.87e-01 100.0% 33.4%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053933 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.80 50.0 5.85e-01 100.0% 89.2%
3719566 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.77 48.0 3.23e-01 98.9% 19.3%
4031999 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.77 46.0 4.77e-01 100.0% 64.7%
3611446 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.76 48.0 3.26e-01 98.9% 20.1%
3998600 5.1.2.46 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Beta-prop_IFT140_1st 0.75 46.0 3.88e-01 98.9% 38.9%
5039633 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.72 48.0 5.34e-01 100.0% 85.1%
3231343 77.1.1.10 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28998 0.69 35.0 3.10e-01 100.0% 33.1%
3272437 5.1.4.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.66 54.0 3.39e-01 100.0% 17.6%
3707052 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.64 46.0 2.90e-01 100.0% 15.3%
4647347 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.63 49.0 3.26e-01 83.7% 85.8%
3553901 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.63 49.0 3.20e-01 83.7% 80.0%
4995431 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.62 45.0 2.94e-01 100.0% 18.6%
3627380 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 48.0 3.20e-01 100.0% 23.1%
3930913 5.1.4.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.61 53.0 3.50e-01 100.0% 25.1%
2650033 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.61 48.0 3.19e-01 83.7% 84.6%
166524 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.61 48.0 3.24e-01 85.9% 84.7%
3865089 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.60 48.0 3.23e-01 85.9% 87.2%
3607433 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 48.0 2.99e-01 100.0% 17.0%
1097232 3180.1.1.1 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.59 43.0 4.07e-01 93.5% 64.5%
3410461 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 50.0 3.29e-01 100.0% 23.4%
3894385 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 45.0 3.04e-01 100.0% 23.2%
3911315 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.59 46.0 3.09e-01 83.7% 87.6%
3540014 243.1.1.40 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 0.59 54.0 4.77e-01 100.0% 79.2%
5044599 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.59 45.0 2.64e-01 100.0% 10.5%
3712023 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 47.0 2.93e-01 100.0% 16.6%
3179728 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 43.0 2.85e-01 100.0% 19.2%
3638019 5.1.5.88 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nucleoporin_N 0.59 54.0 3.33e-01 100.0% 22.2%
3694880 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.59 48.0 4.12e-01 90.2% 55.9%
3899510 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.59 46.0 3.05e-01 83.7% 86.8%
3884771 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.59 45.0 3.04e-01 83.7% 87.1%
3706310 331.19.1.0 ↗ a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains 0.59 44.0 4.24e-01 97.8% 69.5%
3940470 5.1.4.320 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.59 50.0 3.27e-01 100.0% 21.8%
3202006 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 46.0 2.96e-01 100.0% 19.5%
5039724 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.58 49.0 4.88e-01 100.0% 87.4%
3496018 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 51.0 3.26e-01 100.0% 24.3%
5040571 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.58 48.0 3.01e-01 100.0% 18.2%
3477607 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 52.0 3.05e-01 100.0% 15.1%
3940393 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 2.76e-01 100.0% 11.3%
4969673 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 44.0 3.01e-01 100.0% 24.3%
5045363 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.57 43.0 2.87e-01 100.0% 21.2%
5018044 5.1.3.20 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.57 39.0 2.66e-01 100.0% 19.4%
3586471 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 51.0 3.29e-01 100.0% 29.6%
3990338 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 45.0 3.15e-01 100.0% 28.4%
3416381 5.1.4.320 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.56 50.0 3.34e-01 100.0% 25.3%
3799250 5.1.5.105 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st 0.56 47.0 3.01e-01 100.0% 20.8%
3229131 5.1.5.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Vps16_N 0.55 42.0 2.96e-01 100.0% 26.4%
4100600 109.46.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) 0.55 41.0 2.71e-01 100.0% 19.2%
3212698 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 47.0 3.84e-01 100.0% 49.4%
3891226 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.55 43.0 2.95e-01 85.9% 88.8%
3742051 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 49.0 3.33e-01 100.0% 40.9%
3416116 883.1.1.3 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP 0.54 49.0 3.70e-01 100.0% 62.7%
3596741 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.53 44.0 3.76e-01 88.0% 83.4%
3725228 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 48.0 3.20e-01 100.0% 28.5%
4652260 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.52 47.0 3.18e-01 100.0% 28.5%
3703463 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 48.0 2.65e-01 100.0% 39.6%
3518523 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 47.0 3.29e-01 100.0% 32.3%
None — 0.51 42.0 2.86e-01 100.0% 23.7%
2521119 5084.1.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › MSP 0.51 45.0 3.38e-01 100.0% 75.1%
3248970 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.51 42.0 3.97e-01 89.1% 94.5%
3831822 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 46.0 2.66e-01 100.0% 12.8%
3621570 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.50 37.0 2.48e-01 100.0% 19.5%
4857919 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.50 46.0 3.05e-01 100.0% 30.2%
3790971 5.1.4.151 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BCAS3_WD40 0.50 44.0 2.79e-01 100.0% 23.8%