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NC_029119.1__YP_009226774.1__AXJ01_gp098__00098
Bact-VirNC_029119.1__YP_009226774.1__AXJ01_gp098__00098
Identity
- Accession:
- NC_029119 ↗
- Kingdom:
- phage
Quality
92.3
mean pLDDT
Taxonomy
TaxID: 1732063
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-55
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2z1qB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.80 | 71.0 | 5.21e-01 | 98.1% | 39.7% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.77 | 67.0 | 5.33e-01 | 100.0% | 51.4% |
| 3gonA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.75 | 58.0 | 4.32e-01 | 84.9% | 34.3% |
| 7tzoA01 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.73 | 58.0 | 4.07e-01 | 90.6% | 28.2% |
| 4p5aC00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.70 | 58.0 | 3.80e-01 | 92.5% | 35.0% |
| 3r6nA02 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 58.0 | 4.29e-01 | 100.0% | 36.1% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 58.0 | 5.29e-01 | 100.0% | 70.3% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 59.0 | 5.54e-01 | 100.0% | 86.4% |
| 1ki1B01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.67 | 57.0 | 3.94e-01 | 100.0% | 89.9% |
| 2mpnA00 | 6.10.140.1340 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 53.0 | 5.00e-01 | 92.5% | 75.0% |
| 4jykA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 49.0 | 4.79e-01 | 88.7% | 79.3% |
| 5l3wA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.59 | 44.0 | 3.75e-01 | 79.2% | 52.4% |
| 1vfrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.57 | 47.0 | 3.17e-01 | 94.3% | 26.7% |
| 4f03B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 51.0 | 3.71e-01 | 100.0% | 36.6% |
| 3t34A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 45.0 | 2.90e-01 | 100.0% | 16.1% |
| 2m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 34.0 | 3.38e-01 | 73.6% | 57.9% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3269863 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.80 | 67.0 | 4.01e-01 | 100.0% | 12.9% |
| 4971062 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.79 | 68.0 | 5.87e-01 | 98.1% | 62.4% |
| 3882597 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.77 | 67.0 | 5.68e-01 | 100.0% | 64.4% |
| 3696717 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.76 | 68.0 | 4.60e-01 | 100.0% | 29.5% |
| 3947564 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.71 | 60.0 | 5.71e-01 | 100.0% | 84.6% |
| 3589830 | 5043.2.1.8 ↗ | extended segments › Sensor proteins transmembrane domains › NarQ transmembrane domain › NarQ transmembrane domain › DUF5592 | 0.70 | 61.0 | 5.61e-01 | 98.1% | 74.3% |
| 3988447 | 5043.1.1.0 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like | 0.69 | 59.0 | 5.83e-01 | 96.2% | 94.5% |
| 4855060 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.66 | 53.0 | 5.19e-01 | 100.0% | 85.2% |
| 3975170 | 2485.1.1.6 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP | 0.64 | 51.0 | 3.47e-01 | 100.0% | 21.7% |
| 4630575 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.60 | 45.0 | 3.42e-01 | 81.1% | 35.2% |
| 3515411 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.60 | 48.0 | 3.29e-01 | 92.5% | 25.4% |