←Back to structures

NC_029119.1__YP_009226793.1__AXJ01_gp117__00117

Bact-Vir

NC_029119.1__YP_009226793.1__AXJ01_gp117__00117

Identity

Accession:
NC_029119 ↗
Kingdom:
phage

Quality

86.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_SPbeta-like

TaxID: 1732063

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-75
PDB
Domain cluster: rep: IMGVR_UViG_3300014911_000466-3300014911-Ga0180301_1000081919__D10-70
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04014.24 best MazE_antitoxin 30.9 2.80e-07 68.1% 93.8%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ub4C00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.89 60.0 5.81e-01 72.5% 64.0%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.63 45.0 3.01e-01 75.4% 20.1%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 40.0 3.61e-01 71.0% 55.0%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.57 45.0 3.41e-01 88.4% 79.5%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 38.0 2.69e-01 73.9% 43.9%
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.52 30.0 3.02e-01 71.0% 54.9%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.21e-01 73.9% 61.0%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.52 35.0 3.04e-01 72.5% 48.8%
4erdA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 37.0 3.20e-01 75.4% 81.5%
1cnzA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.51 38.0 2.50e-01 82.6% 48.5%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4982519 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.90 56.0 6.51e-01 71.0% 88.0%
4085449 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.89 61.0 5.93e-01 76.8% 65.3%
1104928 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.89 60.0 5.81e-01 72.5% 64.0%
5031928 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.88 59.0 6.58e-01 75.4% 87.3%
5073677 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.88 60.0 6.66e-01 76.8% 89.1%
4933873 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.86 61.0 6.80e-01 75.4% 92.7%
5065651 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.86 59.0 6.52e-01 76.8% 89.1%
5031005 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.86 57.0 6.32e-01 75.4% 85.5%
5065458 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.85 55.0 5.95e-01 71.0% 76.7%
5074248 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.85 59.0 6.53e-01 87.0% 90.9%
5031674 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.84 56.0 6.19e-01 76.8% 85.5%
4955560 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.84 54.0 6.07e-01 71.0% 83.6%
5032072 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.84 57.0 6.34e-01 79.7% 89.1%
5076168 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.83 56.0 5.16e-01 72.5% 56.5%
4955687 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.83 54.0 6.08e-01 72.5% 86.8%
5072446 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.82 58.0 6.24e-01 81.2% 85.0%
5031362 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.82 58.0 6.22e-01 81.2% 85.0%
4966339 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.82 60.0 6.46e-01 92.8% 88.3%
5029188 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.82 53.0 5.88e-01 76.8% 83.6%
4967811 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.82 54.0 5.79e-01 78.3% 78.3%
3984485 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.82 59.0 5.59e-01 78.3% 65.0%
5032296 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.81 55.0 6.14e-01 78.3% 89.1%
5030593 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.81 57.0 6.37e-01 78.3% 92.7%
4639978 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.81 55.0 6.15e-01 97.1% 89.1%
5058522 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.80 53.0 5.76e-01 76.8% 81.0%
4967269 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.80 55.0 6.04e-01 78.3% 89.1%
5058860 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.80 51.0 5.65e-01 72.5% 81.8%
4967881 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.79 52.0 5.84e-01 71.0% 87.0%
5012674 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.78 60.0 6.03e-01 98.6% 81.4%
5031215 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.76 55.0 6.00e-01 81.2% 94.5%
4993713 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.76 51.0 5.55e-01 75.4% 87.3%
5079669 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.76 51.0 5.65e-01 72.5% 87.3%
4928755 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.75 56.0 5.91e-01 78.3% 100.0%
5050062 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.75 52.0 5.58e-01 79.7% 83.3%
4986319 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.75 49.0 5.67e-01 81.2% 94.0%
5030713 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.71 55.0 5.73e-01 91.3% 87.7%
5040491 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.69 56.0 5.61e-01 100.0% 85.7%
5071519 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.67 53.0 5.51e-01 97.1% 89.2%
4934807 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.67 60.0 5.86e-01 100.0% 90.7%
4110276 1.1.3.4 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › SymE_toxin 0.54 45.0 4.53e-01 92.8% 94.3%