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NC_029120.1__YP_009226838.1__AXI88_gp06__00006
Bact-VirNC_029120.1__YP_009226838.1__AXI88_gp06__00006
Identity
- Accession:
- NC_029120 ↗
- Kingdom:
- phage
Quality
69.1
mean pLDDT
Taxonomy
TaxID: 1416032
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-98
Domain cluster:
rep: OM816834.1__WCS67724.1__X__00031__D2-91
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06630.18 best | Exonuc_VIII | 114.5 | 8.30e-33 | 100.0% | 45.1% |
D2
high
residues 145-263
Domain cluster:
rep: ON470580.1__URC08787.1__X__00055__D131-240
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06630.18 best | Exonuc_VIII | 34.8 | 2.50e-08 | 44.5% | 26.4% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zxrA02 | 3.90.1640.30 | Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › | 0.58 | 42.0 | 3.49e-01 | 76.5% | 83.6% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3976412 | 159.1.2.10 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › Exonuc_VIII | 0.93 | 86.0 | 8.58e-01 | 100.0% | 95.0% |
| 4008165 | 148.1.3.352 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF27432 | 0.85 | 65.0 | 7.23e-01 | 88.2% | 100.0% |
| 4987661 | 5076.2.1.13 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF7847 | 0.57 | 39.0 | 3.21e-01 | 70.6% | 92.2% |
| 3821433 | 601.3.1.21 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Cytochrom_C_asm | 0.51 | 38.0 | 3.44e-01 | 80.7% | 88.3% |
D3
high
residues 295-401
Domain cluster:
rep: OM816834.1__WCS67724.1__X__00031__D244-334
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rrmA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.59 | 46.0 | 3.80e-01 | 84.1% | 98.0% |
| 4ga4A01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.55 | 26.0 | 3.27e-01 | 83.2% | 71.6% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999731 | 4002.1.1.5 ↗ | alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › ADH_Fe_C | 0.59 | 45.0 | 3.62e-01 | 82.2% | 98.2% |
| 3206292 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.54 | 38.0 | 3.03e-01 | 73.8% | 74.9% |
| 3743351 | 611.9.1.6 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Ran-binding | 0.52 | 37.0 | 3.36e-01 | 74.8% | 94.8% |