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YP_009230311.1
Arc-VirNC_029316__YP_009230311.1__AZ270-gp58__00058
Identity
- Accession:
- NC_029316 ↗
- Protein ID:
- YP_009230311.1 ↗
- Kingdom:
- archaea
Quality
72.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 42-93
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.75 | 62.0 | 3.92e-01 | 100.0% | 17.8% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.74 | 50.0 | 3.82e-01 | 71.2% | 99.2% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 49.0 | 3.92e-01 | 73.1% | 36.3% |
| 3b0cW00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.70 | 55.0 | 5.03e-01 | 94.2% | 64.4% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 50.0 | 4.81e-01 | 78.8% | 66.7% |
| 2hh7A00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.69 | 51.0 | 4.34e-01 | 78.8% | 64.7% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.69 | 48.0 | 4.32e-01 | 75.0% | 52.1% |
| 5svlA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.69 | 58.0 | 5.39e-01 | 98.1% | 97.1% |
| 1or7B01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.68 | 56.0 | 4.73e-01 | 98.1% | 53.2% |
| 1rtwB00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.68 | 51.0 | 3.37e-01 | 80.8% | 45.2% |
| 5xdcB01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.68 | 47.0 | 3.67e-01 | 78.8% | 34.2% |
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.66 | 52.0 | 4.72e-01 | 92.3% | 63.6% |
| 1sg7A00 | 1.10.1740.70 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB | 0.66 | 56.0 | 5.05e-01 | 100.0% | 78.7% |
| 1r3dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.65 | 46.0 | 2.94e-01 | 84.6% | 15.2% |
| 4ielA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.64 | 45.0 | 3.45e-01 | 76.9% | 32.8% |
| 3q23A08 | 1.20.140.110 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.64 | 54.0 | 3.96e-01 | 100.0% | 46.8% |
| 1c5aA00 | 1.20.91.20 | Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) | 0.64 | 41.0 | 3.89e-01 | 76.9% | 50.8% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.64 | 48.0 | 4.23e-01 | 80.8% | 57.1% |
| 3kr9A02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 43.0 | 4.07e-01 | 75.0% | 59.0% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.64 | 52.0 | 4.38e-01 | 100.0% | 53.9% |
| 4arvA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.63 | 49.0 | 3.71e-01 | 84.6% | 55.6% |
| 8ek4A01 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.63 | 50.0 | 3.70e-01 | 86.5% | 35.3% |
| 2jrmA00 | 1.10.10.620 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain | 0.62 | 41.0 | 3.94e-01 | 94.2% | 60.0% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.62 | 47.0 | 4.50e-01 | 82.7% | 72.1% |
| 1dkqA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.61 | 46.0 | 3.55e-01 | 82.7% | 54.8% |
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 48.0 | 4.72e-01 | 100.0% | 83.9% |
| 3fkjA02 | 1.10.10.2240 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.60 | 40.0 | 3.80e-01 | 71.2% | 82.8% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 44.0 | 4.20e-01 | 82.7% | 71.4% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 45.0 | 4.03e-01 | 94.2% | 58.1% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.58 | 52.0 | 3.11e-01 | 100.0% | 24.0% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.58 | 44.0 | 4.16e-01 | 84.6% | 70.3% |
| 2lhjA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.58 | 43.0 | 3.90e-01 | 98.1% | 57.5% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.58 | 51.0 | 4.00e-01 | 100.0% | 74.5% |
| 7qovB01 | 1.10.472.20 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit | 0.58 | 43.0 | 3.48e-01 | 82.7% | 41.7% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 48.0 | 4.45e-01 | 94.2% | 72.3% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 47.0 | 4.08e-01 | 94.2% | 60.3% |
| 3qygB01 | 1.10.472.20 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit | 0.57 | 43.0 | 3.41e-01 | 88.5% | 38.1% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 42.0 | 3.77e-01 | 86.5% | 55.1% |
| 3l4gB03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.56 | 40.0 | 3.68e-01 | 80.8% | 74.3% |
| 3ff5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 37.0 | 3.67e-01 | 80.8% | 68.5% |
| 3euaA02 | 1.10.10.2240 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 40.0 | 3.71e-01 | 84.6% | 62.5% |
| 1s05A00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.53 | 46.0 | 3.53e-01 | 100.0% | 48.8% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.51 | 45.0 | 4.37e-01 | 100.0% | 96.6% |
| 2jq5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 37.0 | 2.83e-01 | 80.8% | 75.8% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3596754 | 101.7.1.0 ↗ | alpha arrays › HTH › DEK-C › DEK-C | 0.87 | 65.0 | 5.99e-01 | 80.8% | 63.1% |
| 4626442 | 7010.1.1.0 ↗ | alpha arrays › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator | 0.83 | 75.0 | 7.14e-01 | 100.0% | 88.3% |
| 3598979 | 4095.1.1.0 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain | 0.78 | 66.0 | 4.26e-01 | 100.0% | 68.0% |
| 3734521 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.75 | 64.0 | 3.81e-01 | 100.0% | 18.5% |
| 3503989 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.75 | 64.0 | 5.28e-01 | 98.1% | 56.8% |
| 3621479 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.73 | 58.0 | 5.01e-01 | 98.1% | 55.3% |
| 5058468 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.73 | 59.0 | 5.26e-01 | 100.0% | 62.7% |
| 4951179 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.73 | 59.0 | 4.78e-01 | 100.0% | 47.0% |
| 4345163 | 633.10.1.28 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › PF27080 | 0.71 | 59.0 | 4.55e-01 | 100.0% | 41.7% |
| 3963947 | 3826.1.1.25 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › GlutR_dimer | 0.71 | 57.0 | 5.05e-01 | 100.0% | 60.0% |
| 3290367 | 3470.1.1.0 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain | 0.70 | 59.0 | 5.56e-01 | 98.1% | 83.1% |
| 3597348 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.69 | 57.0 | 3.54e-01 | 100.0% | 16.1% |
| 3503635 | 605.1.1.133 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › OST3_OST6 | 0.69 | 49.0 | 3.73e-01 | 80.8% | 32.5% |
| 4211233 | 4120.1.1.60 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › GlutR_dimer | 0.69 | 55.0 | 4.87e-01 | 100.0% | 60.0% |
| 3935681 | 3664.1.1.0 ↗ | alpha arrays › Small, acid-soluble spore protein C › Small, acid-soluble spore protein C › Small, acid-soluble spore protein C | 0.68 | 55.0 | 5.63e-01 | 96.2% | 100.0% |
| 4487944 | 605.1.1.131 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Val_tRNA-synt_C | 0.68 | 48.0 | 4.53e-01 | 75.0% | 60.0% |
| 3611063 | 3559.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 | 0.68 | 56.0 | 5.03e-01 | 100.0% | 66.3% |
| 5049361 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.68 | 48.0 | 4.21e-01 | 80.8% | 50.0% |
| 3592316 | 7014.1.1.0 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain | 0.67 | 58.0 | 3.57e-01 | 100.0% | 68.6% |
| 5045248 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.66 | 48.0 | 4.12e-01 | 80.8% | 48.2% |
| 5074552 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.66 | 48.0 | 3.73e-01 | 80.8% | 35.7% |
| 4971062 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.65 | 48.0 | 4.09e-01 | 80.8% | 48.2% |
| 5043641 | 205.1.1.16 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 | 0.65 | 56.0 | 3.83e-01 | 100.0% | 43.6% |
| 3447846 | 5010.1.1.6 ↗ | extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › SPC12 | 0.64 | 48.0 | 5.01e-01 | 92.3% | 91.7% |
| 3789792 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.63 | 52.0 | 4.42e-01 | 100.0% | 54.7% |
| 3630756 | 5043.1.1.2 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › SPC12 | 0.62 | 52.0 | 4.79e-01 | 100.0% | 71.4% |
| 4060748 | 3686.1.1.1 ↗ | alpha arrays › Nitrile hydratase subunit beta N-termial domain › Nitrile hydratase subunit beta N-termial domain › Nitrile hydratase subunit beta N-termial domain › NHase_beta_N | 0.62 | 45.0 | 3.82e-01 | 88.5% | 44.2% |
| 4943371 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.61 | 45.0 | 4.29e-01 | 88.5% | 68.6% |
| 3721242 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.61 | 50.0 | 4.46e-01 | 100.0% | 63.1% |
| 4189420 | 102.2.1.4 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH | 0.61 | 52.0 | 4.14e-01 | 96.2% | 52.4% |
| 3938856 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.61 | 52.0 | 4.28e-01 | 100.0% | 52.0% |
| 5028572 | 633.5.1.0 ↗ | alpha bundles › Bromodomain-like › LemA-like › LemA-like | 0.61 | 44.0 | 3.64e-01 | 78.8% | 44.2% |
| 4025324 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.58 | 46.0 | 4.28e-01 | 92.3% | 74.3% |
| 3848998 | 192.10.1.0 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain | 0.56 | 50.0 | 4.37e-01 | 100.0% | 68.4% |
| 4419521 | 243.1.1.108 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_YvbJ | 0.56 | 46.0 | 3.43e-01 | 92.3% | 86.7% |
| 3930836 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.50 | 43.0 | 3.35e-01 | 100.0% | 42.5% |