←Back to structures

YP_009230324.1

Arc-Vir

NC_029316__YP_009230324.1__AZ270-gp71__00071

Identity

Accession:
NC_029316 ↗
Protein ID:
YP_009230324.1 ↗
Kingdom:
archaea

Quality

79.8 mean pLDDT

Taxonomy

Bicaudaviridae› Acidianus_tailed_spindle_virus

TaxID: 1797140

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-116
PDB
Domain cluster: rep: IMGVR_UViG_3300005099_000002-3300005099-Ga0072682_10056737__D8-106
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.72 32.0 4.56e-01 79.8% 89.1%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.71 30.0 4.16e-01 78.7% 81.8%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.70 32.0 3.10e-01 100.0% 38.5%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 31.0 3.83e-01 100.0% 69.0%
1z01A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 30.0 3.70e-01 100.0% 65.6%
2qpzA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.66 30.0 2.94e-01 100.0% 38.8%
2l3tA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 30.0 2.97e-01 100.0% 40.0%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 31.0 3.66e-01 77.7% 77.9%
6klsA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 27.0 2.70e-01 78.7% 45.7%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 36.0 3.01e-01 70.2% 87.5%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3597513 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 35.0 4.52e-01 75.5% 70.9%
4125814 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.78 43.0 4.80e-01 100.0% 68.0%
5078127 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.75 58.0 6.02e-01 81.9% 98.8%
3913782 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 35.0 4.13e-01 71.3% 67.2%
5014837 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.71 63.0 5.13e-01 97.9% 68.4%
4155252 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.71 62.0 6.06e-01 98.9% 92.4%
4981269 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 47.0 4.72e-01 97.9% 67.4%
5011958 4294.1.1.1 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.69 30.0 2.97e-01 96.8% 38.0%
4069543 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.68 32.0 3.55e-01 75.5% 54.7%
3570369 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 34.0 3.48e-01 75.5% 50.0%
4966530 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.64 40.0 4.63e-01 91.5% 85.7%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.63 34.0 3.77e-01 75.5% 65.3%
5055336 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.62 42.0 4.34e-01 88.3% 73.3%
5040464 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 46.0 4.65e-01 97.9% 77.9%
5022645 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.61 41.0 4.22e-01 89.4% 72.2%
4097598 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.60 44.0 4.19e-01 91.5% 65.5%
3399965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 32.0 3.30e-01 75.5% 53.3%
3787818 2.9.1.0 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like 0.58 41.0 2.60e-01 73.4% 38.7%
3574976 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.57 31.0 3.79e-01 79.8% 87.3%
3283754 1.1.5.15 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.57 51.0 4.45e-01 100.0% 82.5%
4868829 290.1.1.1 ↗ beta barrels › Sortase › Sortase › Sortase › Sortase 0.56 50.0 4.55e-01 98.9% 91.1%
5035871 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.56 38.0 3.82e-01 100.0% 69.5%
4989950 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 45.0 4.25e-01 97.9% 74.8%
3486144 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 38.0 2.68e-01 75.5% 55.6%
4823830 4294.1.1.1 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.52 30.0 2.97e-01 100.0% 53.1%
5028172 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 45.0 4.14e-01 98.9% 72.5%
5011662 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 46.0 3.93e-01 97.9% 80.0%
5072025 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.51 46.0 4.17e-01 100.0% 73.6%
5047619 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 46.0 4.09e-01 98.9% 70.8%
3227147 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 40.0 2.82e-01 88.3% 58.5%