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NC_030904.1__YP_009273382.1__BH781_gp58__00058
Bact-VirNC_030904.1__YP_009273382.1__BH781_gp58__00058
Identity
- Accession:
- NC_030904 ↗
- Kingdom:
- phage
Quality
92.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-52
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pubA01 | 1.10.10.2400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain | 0.88 | 74.0 | 6.45e-01 | 100.0% | 62.2% |
| 1uujA00 | 1.20.960.30 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.82 | 60.0 | 5.17e-01 | 100.0% | 51.3% |
| 4gyoA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.78 | 66.0 | 4.21e-01 | 92.0% | 23.6% |
| 4b0zA00 | 1.25.40.990 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.77 | 70.0 | 4.45e-01 | 100.0% | 26.0% |
| 3beyD00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.77 | 61.0 | 4.95e-01 | 100.0% | 46.8% |
| 2vxgA01 | 6.10.140.270 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 55.0 | 5.78e-01 | 94.0% | 84.8% |
| 1wy6A00 | 1.25.40.350 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.75 | 63.0 | 4.50e-01 | 100.0% | 30.8% |
| 2ouxA01 | 1.25.60.10 | Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like | 0.75 | 59.0 | 4.46e-01 | 98.0% | 35.2% |
| 4ui9Y03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.71 | 58.0 | 5.00e-01 | 92.0% | 87.5% |
| 4gyoB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.70 | 62.0 | 4.51e-01 | 100.0% | 65.5% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.70 | 56.0 | 4.56e-01 | 90.0% | 61.9% |
| 3ggyA00 | 1.20.1260.60 | Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 | 0.70 | 62.0 | 4.16e-01 | 100.0% | 81.7% |
| 5nnpE01 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.69 | 56.0 | 3.25e-01 | 92.0% | 10.8% |
| 1wdyA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.69 | 55.0 | 3.38e-01 | 98.0% | 15.4% |
| 2r5sA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.69 | 57.0 | 4.80e-01 | 100.0% | 55.4% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 46.0 | 4.00e-01 | 72.0% | 97.5% |
| 7qihA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.67 | 54.0 | 4.33e-01 | 90.0% | 72.3% |
| 3h3mA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.67 | 59.0 | 4.92e-01 | 100.0% | 77.5% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.67 | 56.0 | 4.38e-01 | 100.0% | 45.5% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 53.0 | 5.12e-01 | 90.0% | 76.3% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.67 | 58.0 | 4.90e-01 | 100.0% | 94.1% |
| 2l6jA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.66 | 56.0 | 4.44e-01 | 100.0% | 81.1% |
| 2ra1A02 | 1.20.58.780 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 58.0 | 5.23e-01 | 98.0% | 97.1% |
| 2p58C00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.66 | 57.0 | 4.42e-01 | 98.0% | 67.0% |
| 1e8yA03 | 1.25.40.70 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) | 0.66 | 56.0 | 3.84e-01 | 100.0% | 26.9% |
| 1f7uA02 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.66 | 52.0 | 4.05e-01 | 94.0% | 56.8% |
| 3jz0A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.64 | 56.0 | 4.16e-01 | 100.0% | 90.0% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 49.0 | 4.24e-01 | 86.0% | 88.9% |
| 1jmwA00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.64 | 52.0 | 3.88e-01 | 98.0% | 80.8% |
| 3ph0C00 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 54.0 | 5.35e-01 | 100.0% | 92.5% |
| 4ap2B01 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.62 | 52.0 | 3.92e-01 | 98.0% | 63.4% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.62 | 51.0 | 4.53e-01 | 96.0% | 81.8% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.62 | 52.0 | 4.25e-01 | 98.0% | 80.4% |
| 2vkjA00 | 1.20.58.2030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 52.0 | 4.08e-01 | 98.0% | 45.3% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 43.0 | 4.11e-01 | 86.0% | 63.3% |
| 2fbnA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 52.0 | 3.73e-01 | 100.0% | 57.5% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.60 | 42.0 | 3.98e-01 | 76.0% | 67.2% |
| 4epzA00 | 1.25.40.810 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ | 0.60 | 50.0 | 3.64e-01 | 100.0% | 66.2% |
| 2c2lA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 50.0 | 3.76e-01 | 100.0% | 84.2% |
| 3oxfA05 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 51.0 | 4.50e-01 | 100.0% | 70.7% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.58 | 41.0 | 4.22e-01 | 78.0% | 79.6% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3255903 | 109.3.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 | 0.81 | 71.0 | 4.59e-01 | 100.0% | 24.7% |
| 3884525 | 109.4.1.1524 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_ZFYVE26 | 0.78 | 67.0 | 5.03e-01 | 100.0% | 39.2% |
| 3578381 | 109.4.1.890 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C | 0.77 | 64.0 | 4.67e-01 | 100.0% | 33.6% |
| 5044963 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.77 | 66.0 | 4.82e-01 | 98.0% | 38.6% |
| 3600071 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.77 | 64.0 | 5.84e-01 | 92.0% | 76.9% |
| 3836238 | 109.4.1.64 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 | 0.76 | 66.0 | 4.04e-01 | 100.0% | 17.7% |
| 3699906 | 109.4.1.1522 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, PPR_3, TPR_24 | 0.75 | 66.0 | 4.72e-01 | 98.0% | 57.9% |
| 3277195 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.74 | 61.0 | 5.98e-01 | 98.0% | 90.9% |
| 3327663 | 109.4.1.1271 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 | 0.74 | 65.0 | 4.06e-01 | 100.0% | 40.0% |
| 4949693 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.72 | 61.0 | 4.52e-01 | 100.0% | 37.0% |
| 4469629 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.72 | 62.0 | 4.38e-01 | 100.0% | 45.5% |
| 3204386 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 61.0 | 4.69e-01 | 100.0% | 91.7% |
| 3741700 | 109.40.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C | 0.70 | 56.0 | 4.25e-01 | 100.0% | 38.3% |
| 5065296 | 604.17.1.0 ↗ | alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like | 0.69 | 58.0 | 5.55e-01 | 96.0% | 98.3% |
| 3592423 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 60.0 | 3.96e-01 | 100.0% | 61.0% |
| 3582736 | 109.4.1.142 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CSN8_PSD8_EIF3K | 0.68 | 59.0 | 4.31e-01 | 100.0% | 53.8% |
| 3928352 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 60.0 | 3.94e-01 | 100.0% | 41.9% |
| 4992791 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.68 | 59.0 | 3.91e-01 | 100.0% | 26.3% |
| 1346823 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.66 | 53.0 | 4.91e-01 | 92.0% | 70.3% |
| 3262951 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.66 | 53.0 | 3.91e-01 | 100.0% | 78.2% |
| 4886833 | 601.48.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain › ArnB_C | 0.66 | 56.0 | 4.60e-01 | 100.0% | 73.2% |
| 3876892 | 375.2.1.0 ↗ | few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like | 0.65 | 49.0 | 4.30e-01 | 92.0% | 52.5% |
| 3606827 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.65 | 45.0 | 4.53e-01 | 82.0% | 74.0% |
| 143968 | 109.4.1.137 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Type_III_YscG | 0.64 | 54.0 | 5.35e-01 | 100.0% | 92.5% |
| 5048987 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 54.0 | 5.32e-01 | 100.0% | 96.3% |
| 1814352 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.61 | 52.0 | 4.08e-01 | 98.0% | 45.3% |
| 4450827 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.57 | 39.0 | 3.79e-01 | 74.0% | 73.3% |