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NC_030905.1__YP_009273397.1__BH793_gp06__00006

Bact-Vir

Identity

Accession:: NC_030905 ↗
Kingdom:: phage

Quality

75.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Woesvirus› Gordonia_phage_Woes

TaxID: 1838084

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-190

PDB

Domain cluster: rep: GU580940.1__ADD80787.1__ReqiDocB7gene001__00001__D10-186

D2 medium residues 191-257

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1zb1A00	1.25.40.280	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains	0.57	49.0	3.05e-01	95.5%	46.6%
4msxA02	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.56	43.0	2.87e-01	86.6%	33.8%
3i6eA01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.52	40.0	3.56e-01	86.6%	89.3%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4509784	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.58	49.0	4.31e-01	94.0%	64.0%
3881333	376.1.1.20 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX	0.54	37.0	3.08e-01	70.1%	56.5%
3483257	650.1.1.1 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ	0.54	31.0	3.40e-01	73.1%	69.1%

D3 medium residues 293-346

PDB

Domain cluster: representative

D4 medium residues 347-398

PDB

Domain cluster: representative

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1nt2B02	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.87	61.0	5.53e-01	86.5%	56.7%
1lvfB00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.82	64.0	5.10e-01	86.5%	54.8%
6ircA01	1.20.1230.10	Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain	0.80	57.0	3.72e-01	84.6%	19.2%
4cybD00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.79	55.0	3.76e-01	73.1%	33.9%
3fxdC00	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.78	54.0	5.56e-01	88.5%	76.0%
3behB01	1.20.120.540	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels	0.75	58.0	4.53e-01	86.5%	40.2%
3eabE00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.72	54.0	4.57e-01	80.8%	48.8%
3eslA01	1.20.58.2070	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.72	55.0	4.87e-01	84.6%	57.3%
5tprA02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.70	56.0	3.61e-01	86.5%	21.8%
1eteA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.69	49.0	3.63e-01	92.3%	29.1%
3ihmA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.66	51.0	3.36e-01	84.6%	40.9%
4u7iA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.64	51.0	4.32e-01	90.4%	57.0%
3pdiA02	3.40.50.12380	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase MoFe cofactor biosynthesis protein NifE, C-terminal	0.62	48.0	3.06e-01	86.5%	40.3%
1vt0k00	1.10.3230.20	Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4)	0.58	46.0	3.52e-01	100.0%	34.5%
2yx0A00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.53	42.0	2.67e-01	94.2%	37.3%
7wj9A01	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.52	39.0	2.49e-01	84.6%	28.8%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3598098	3652.1.1.0 ↗	alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1	0.83	59.0	6.05e-01	90.4%	78.0%
3655933	604.12.1.2 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1	0.80	62.0	4.89e-01	82.7%	45.0%
4075864	192.6.1.0 ↗	alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain	0.75	55.0	5.43e-01	84.6%	74.5%
4879730	5001.1.1.3 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2	0.75	58.0	5.37e-01	84.6%	65.7%
3771926	5069.1.3.63 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › PF29720	0.73	56.0	4.20e-01	86.5%	37.8%
4026427	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.71	61.0	3.65e-01	96.2%	50.6%
3601516	4106.1.1.1 ↗	few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC	0.69	53.0	3.35e-01	84.6%	17.8%
4883777	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.67	55.0	5.23e-01	92.3%	79.0%
3484928	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.66	50.0	4.51e-01	84.6%	57.3%
4264722	10.12.1.8 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding	0.63	47.0	3.38e-01	82.7%	25.9%
3477883	4163.1.2.0 ↗	alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like	0.62	54.0	4.13e-01	100.0%	43.5%
3807618	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.61	46.0	4.60e-01	88.5%	83.6%
3615697	601.1.1.78 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Oscp1	0.60	44.0	3.16e-01	80.8%	88.4%

D5 medium residues 399-452

PDB