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NC_030905.1__YP_009273453.1__BH793_gp50__00062

Bact-Vir

NC_030905.1__YP_009273453.1__BH793_gp50__00062

Identity

Accession:
NC_030905 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-80
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.73 43.0 4.10e-01 73.0% 50.6%
2ch5A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 62.0 4.92e-01 100.0% 71.1%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 61.0 4.21e-01 100.0% 94.3%
5f7pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 60.0 5.08e-01 100.0% 82.9%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 61.0 4.89e-01 100.0% 73.4%
2w40A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 59.0 4.07e-01 100.0% 94.5%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.66 42.0 4.40e-01 79.7% 72.7%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 59.0 5.16e-01 100.0% 95.5%
3u3gA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.65 59.0 4.74e-01 100.0% 82.1%
1z05A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 58.0 4.54e-01 100.0% 68.2%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 45.0 4.11e-01 98.6% 53.9%
2itmA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 56.0 3.96e-01 100.0% 63.5%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 45.0 4.78e-01 79.7% 84.8%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 35.0 3.57e-01 100.0% 54.2%
3t69A01 3.30.420.300 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain 0.62 55.0 5.56e-01 98.6% 98.7%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 56.0 5.05e-01 100.0% 99.0%
4e19A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 56.0 4.55e-01 100.0% 82.7%
4o5fA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 55.0 4.59e-01 100.0% 99.2%
2f9wA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 54.0 4.49e-01 100.0% 96.2%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 54.0 4.93e-01 100.0% 94.9%
5jr6A02 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.60 52.0 4.18e-01 100.0% 75.6%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 38.0 2.56e-01 74.3% 15.9%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 53.0 4.80e-01 100.0% 97.1%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 53.0 4.87e-01 100.0% 99.0%
6cngA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.60 51.0 4.39e-01 100.0% 90.6%
2f9wA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 54.0 4.59e-01 100.0% 99.2%
3gkmA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 42.0 3.34e-01 75.7% 79.0%
4eo3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 42.0 3.47e-01 75.7% 81.2%
3my2A00 2.60.450.10 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › Lipopolysaccharide (LPS) transport protein A like domain 0.59 42.0 3.48e-01 73.0% 88.1%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 41.0 4.10e-01 71.6% 79.7%
3fdjA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.59 50.0 4.30e-01 100.0% 91.4%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 51.0 3.97e-01 100.0% 64.8%
3jr7A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.57 49.0 4.21e-01 100.0% 94.3%
3pl5A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.56 49.0 4.24e-01 100.0% 88.4%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 33.0 2.85e-01 95.9% 34.7%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 48.0 4.29e-01 100.0% 86.4%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.60e-01 100.0% 56.9%
2nn6C00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.53 41.0 2.90e-01 89.2% 88.5%
3u1kC01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.52 41.0 3.05e-01 90.5% 93.8%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 35.0 2.97e-01 100.0% 41.5%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 42.0 3.36e-01 94.6% 87.3%
2z1aA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 43.0 2.99e-01 100.0% 83.0%
3p2hA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 40.0 3.16e-01 91.9% 75.0%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 43.0 2.97e-01 98.6% 88.4%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 46.0 2.93e-01 100.0% 83.7%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.50 40.0 3.36e-01 100.0% 46.9%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952072 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.84 53.0 6.29e-01 70.3% 94.0%
4297945 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.84 52.0 5.96e-01 73.0% 85.5%
3284714 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.83 52.0 5.63e-01 73.0% 74.6%
3974688 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.80 48.0 5.66e-01 71.6% 90.0%
5075465 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.79 51.0 5.55e-01 74.3% 80.0%
4982700 2484.1.1.330 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 0.68 48.0 3.77e-01 100.0% 34.4%
4012700 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.66 48.0 3.46e-01 77.0% 77.2%
3204490 2485.1.1.30 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Phe_hydrox_dim 0.66 48.0 3.44e-01 77.0% 76.6%
2074164 2484.1.1.6 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.66 58.0 4.06e-01 100.0% 94.7%
3814983 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.66 52.0 5.25e-01 85.1% 93.3%
3193146 2485.1.1.30 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Phe_hydrox_dim 0.66 48.0 3.57e-01 77.0% 74.2%
3945182 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.66 59.0 5.28e-01 100.0% 97.1%
4169299 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.66 45.0 3.94e-01 74.3% 47.7%
4127407 2484.1.1.22 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.66 59.0 4.43e-01 100.0% 51.7%
3250206 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.65 56.0 5.59e-01 97.3% 93.3%
3341735 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.65 59.0 4.26e-01 100.0% 76.0%
5074297 2484.1.1.6 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.64 56.0 3.95e-01 100.0% 95.5%
5060242 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 57.0 5.17e-01 100.0% 74.0%
3510425 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.63 40.0 3.07e-01 82.4% 31.0%
4116094 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.63 56.0 4.87e-01 100.0% 91.3%
5075022 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.63 58.0 4.72e-01 100.0% 84.6%
5063667 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 56.0 5.03e-01 100.0% 88.6%
4089497 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.62 56.0 4.51e-01 100.0% 75.0%
3954516 2484.1.1.144 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.62 55.0 4.68e-01 100.0% 64.2%
4953417 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.61 43.0 4.44e-01 73.0% 85.7%
4381129 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.61 55.0 4.46e-01 100.0% 83.5%
185599 3392.1.1.0 a+b two layers › Cytoplasmic domain of BfpC › Cytoplasmic domain of BfpC › Cytoplasmic domain of BfpC 0.61 48.0 3.77e-01 100.0% 39.5%
4950700 2485.1.1.82 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › ATP-synt_10 0.61 45.0 3.51e-01 78.4% 78.1%
4517494 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.61 54.0 4.52e-01 100.0% 76.2%
4110965 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.61 54.0 4.42e-01 100.0% 78.6%
5018345 2485.1.1.82 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › ATP-synt_10 0.61 45.0 3.74e-01 78.4% 94.6%
4219785 2484.1.1.144 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.61 54.0 4.62e-01 100.0% 65.8%
3710553 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 54.0 4.40e-01 100.0% 90.6%
4564349 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.60 54.0 4.45e-01 100.0% 90.8%
3349450 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.60 44.0 3.78e-01 100.0% 48.3%
3351393 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 48.0 4.46e-01 87.8% 83.2%
140602 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.60 53.0 4.57e-01 100.0% 84.0%
4660064 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.60 54.0 4.45e-01 100.0% 88.5%
3956789 2484.1.1.144 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.59 53.0 4.22e-01 100.0% 54.0%
3957585 2484.1.1.144 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.59 52.0 4.74e-01 95.9% 76.8%
3511091 220.1.1.145 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RASGAP 0.59 41.0 4.52e-01 81.1% 90.0%
3618917 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 40.0 3.50e-01 87.8% 47.3%
5045878 2485.1.1.82 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › ATP-synt_10 0.58 40.0 3.25e-01 74.3% 81.3%
4329368 301.13.1.1 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.57 50.0 4.28e-01 100.0% 93.6%
5063663 2484.1.1.144 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.57 49.0 4.41e-01 100.0% 67.6%
4461189 301.13.1.1 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.57 49.0 4.20e-01 100.0% 93.6%
4956002 2484.4.1.0 mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like 0.57 51.0 4.49e-01 100.0% 79.1%
4436313 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 40.0 3.82e-01 75.7% 64.4%
5045866 2484.1.1.330 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 0.56 48.0 3.78e-01 100.0% 45.0%
4265013 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.55 48.0 4.00e-01 100.0% 84.4%
4947833 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.62e-01 85.1% 58.4%
5008587 2484.1.1.330 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 0.55 47.0 3.19e-01 100.0% 24.8%
3903067 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 39.0 3.36e-01 79.7% 45.6%
3217858 220.1.1.37 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.55 41.0 3.03e-01 79.7% 32.6%
4050569 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.54 46.0 3.90e-01 100.0% 85.2%
3212107 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.54 48.0 3.29e-01 100.0% 53.8%
3612803 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 44.0 3.56e-01 93.2% 82.7%
3242741 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 47.0 3.23e-01 100.0% 51.0%
3696318 5.1.4.249 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 0.52 41.0 2.75e-01 97.3% 93.0%
3892345 5.1.4.254 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.51 43.0 2.75e-01 100.0% 69.4%
4385617 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 46.0 2.77e-01 100.0% 47.5%
5072652 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.67e-01 91.9% 96.4%
3268843 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.51 38.0 3.09e-01 87.8% 79.4%
4018977 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 42.0 3.59e-01 94.6% 69.6%
3640834 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.50 35.0 3.18e-01 75.7% 74.3%