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NC_030915.1__YP_009274314.1__BH761_gp087__00087

Bact-Vir

NC_030915.1__YP_009274314.1__BH761_gp087__00087

Identity

Accession:
NC_030915 ↗
Kingdom:
phage

Quality

52.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Orchidvirus› Gordonia_phage_Orchid

TaxID: 1838075

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-166
PDB
D2 medium residues 186-289
PDB
Domain cluster: rep: KR063281.1__AKJ72637.1__GMA2_99__00099__D168-254
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19474.5 best DUF6011 33.4 3.60e-08 30.8% 78.4%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 29.0 3.39e-01 83.7% 60.0%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.63 47.0 5.07e-01 88.5% 92.0%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.60 39.0 3.97e-01 84.6% 66.0%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 44.0 3.23e-01 84.6% 92.0%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.51 32.0 3.46e-01 82.7% 73.0%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3796352 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 30.0 3.68e-01 87.5% 67.7%
3589823 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 29.0 3.60e-01 83.7% 73.8%
3622055 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 33.0 3.61e-01 70.2% 65.9%
3596085 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.57 34.0 3.82e-01 88.5% 76.2%
3743299 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.57 40.0 3.96e-01 72.1% 72.7%
3427749 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.56 35.0 4.19e-01 91.3% 100.0%
3999890 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 45.0 3.05e-01 89.4% 98.5%
3743364 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.54 37.0 3.52e-01 70.2% 64.8%
3338677 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.54 41.0 2.92e-01 78.8% 95.4%
3706874 5.1.3.243 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_WDR35_2nd 0.52 40.0 2.86e-01 80.8% 99.7%
4029094 3257.1.1.0 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain 0.52 41.0 3.36e-01 85.6% 94.0%
4642895 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 36.0 3.41e-01 73.1% 96.2%
3641506 3957.1.1.0 ↗ a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 0.51 35.0 3.84e-01 79.8% 85.9%
3220873 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.51 29.0 2.98e-01 87.5% 56.0%
3257727 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.51 29.0 2.76e-01 87.5% 44.6%