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NC_030915.1__YP_009274315.1__BH761_gp088__00088

Bact-Vir

NC_030915.1__YP_009274315.1__BH761_gp088__00088

Identity

Accession:
NC_030915 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Orchidvirus› Gordonia_phage_Orchid

TaxID: 1838075

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-58
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.76 46.0 4.09e-01 90.6% 43.8%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 61.0 5.53e-01 100.0% 66.2%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 61.0 5.48e-01 100.0% 65.3%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 52.0 4.97e-01 96.2% 63.9%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 63.0 5.98e-01 100.0% 80.6%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 57.0 5.27e-01 100.0% 66.2%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.73 53.0 5.51e-01 100.0% 85.4%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.72 60.0 5.12e-01 90.6% 87.8%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.71 64.0 6.04e-01 100.0% 85.7%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 50.0 4.53e-01 92.5% 56.2%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.69 49.0 5.31e-01 100.0% 93.0%
1rvjH02 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.69 54.0 4.08e-01 100.0% 34.8%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 4.80e-01 100.0% 74.0%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 4.91e-01 100.0% 69.8%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 4.94e-01 100.0% 79.2%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 58.0 5.86e-01 100.0% 94.4%
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 36.0 4.29e-01 81.1% 82.4%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 4.86e-01 100.0% 70.0%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.73e-01 100.0% 81.8%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 55.0 5.08e-01 100.0% 95.5%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 55.0 5.32e-01 100.0% 90.0%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 4.84e-01 100.0% 71.6%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 54.0 4.74e-01 100.0% 69.2%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 52.0 4.89e-01 100.0% 88.1%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.59 37.0 3.81e-01 90.6% 64.7%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.59 36.0 3.27e-01 94.3% 43.1%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 51.0 4.71e-01 100.0% 75.7%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 51.0 4.46e-01 100.0% 66.3%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.71e-01 100.0% 89.1%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 50.0 2.98e-01 100.0% 36.6%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 49.0 4.21e-01 100.0% 64.0%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.55 43.0 3.92e-01 96.2% 79.3%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 45.0 4.65e-01 98.1% 98.0%
6cxhA03 2.60.40.1580 Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 0.54 45.0 3.38e-01 94.3% 75.7%
1ddqC02 3.90.1100.10 Alpha Beta › Alpha-Beta Complex › Rna Polymerase Beta Subunit; Chain: C,domain 2 › 0.54 44.0 2.79e-01 100.0% 36.4%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 46.0 4.36e-01 100.0% 80.3%
2pndA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.39e-01 92.5% 72.3%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.53 38.0 3.24e-01 81.1% 100.0%
6cmzA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 46.0 3.56e-01 100.0% 72.3%
4v1ap00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 42.0 3.60e-01 98.1% 85.6%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 3.47e-01 100.0% 72.6%
3vb0A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 38.0 2.92e-01 96.2% 32.6%
4izzB03 1.10.10.1670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain 0.51 37.0 3.09e-01 86.8% 96.5%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 45.0 3.73e-01 100.0% 93.7%
5nahA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 45.0 2.71e-01 100.0% 40.7%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4998870 4.1.1.483 ↗ beta barrels › SH3 › SH3 › SH3 › RRXRR 0.87 61.0 5.14e-01 100.0% 45.9%
5042477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 58.0 6.24e-01 100.0% 82.2%
4998329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 60.0 5.95e-01 100.0% 70.9%
2427475 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 63.0 5.77e-01 100.0% 65.7%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 67.0 6.20e-01 100.0% 72.3%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.79 65.0 6.06e-01 100.0% 73.4%
3037102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 59.0 5.54e-01 100.0% 67.7%
4241924 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.78 63.0 5.19e-01 100.0% 51.1%
3660964 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.78 64.0 5.08e-01 100.0% 47.0%
3173941 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 60.0 4.80e-01 100.0% 44.0%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.77 58.0 5.95e-01 100.0% 84.0%
4629735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 65.0 6.02e-01 100.0% 73.8%
3231177 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.77 59.0 6.05e-01 100.0% 86.0%
4300449 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.77 64.0 5.95e-01 100.0% 73.8%
3597255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 62.0 5.22e-01 100.0% 55.3%
3741020 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 60.0 5.43e-01 100.0% 65.7%
3476178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 58.0 4.34e-01 100.0% 36.7%
3486496 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 57.0 5.71e-01 100.0% 80.0%
1263713 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.74 55.0 5.58e-01 100.0% 80.8%
3742938 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.74 63.0 5.90e-01 100.0% 76.9%
4971532 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 61.0 5.56e-01 100.0% 68.6%
224080 2.14.1.2 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › CHS5_N 0.74 44.0 3.94e-01 90.6% 42.1%
5075469 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.73 60.0 5.67e-01 100.0% 73.8%
145285 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.73 57.0 5.29e-01 100.0% 68.2%
4027502 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 58.0 5.39e-01 100.0% 70.8%
5031165 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.72 61.0 5.60e-01 100.0% 71.4%
3301383 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.72 56.0 5.76e-01 100.0% 88.0%
3660755 4.8.1.21 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.71 55.0 4.90e-01 100.0% 60.0%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.70 55.0 4.90e-01 100.0% 60.0%
1289661 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.70 52.0 4.86e-01 100.0% 64.2%
3300051 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.70 52.0 4.69e-01 100.0% 57.3%
3616769 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.69 61.0 4.94e-01 100.0% 53.7%
3243188 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 63.0 5.50e-01 100.0% 80.0%
3999508 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 61.0 5.51e-01 100.0% 81.4%
4003181 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 58.0 5.62e-01 100.0% 95.0%
3898952 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 57.0 5.10e-01 100.0% 72.0%
4616207 4.1.1.448 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5372 0.64 51.0 5.20e-01 100.0% 96.0%
5059830 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.63 54.0 4.60e-01 100.0% 64.4%
4020073 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 5.02e-01 100.0% 75.7%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 55.0 5.32e-01 100.0% 90.0%
3579728 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 54.0 4.98e-01 100.0% 77.1%
3397690 395.1.1.3 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › JTB 0.61 47.0 4.62e-01 88.7% 83.3%
3924338 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 53.0 4.88e-01 100.0% 75.7%
3900733 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 52.0 4.81e-01 100.0% 75.7%
3609527 2006.1.1.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.59 41.0 2.87e-01 98.1% 19.5%
1884741 4.1.1.130 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_19 0.59 45.0 4.45e-01 100.0% 78.0%
3706670 292.2.1.6 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › DUF4520 0.58 38.0 3.07e-01 81.1% 31.8%
2664854 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.58 50.0 4.06e-01 100.0% 52.0%
3814728 376.1.2.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.57 48.0 4.66e-01 100.0% 86.7%
4983311 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.57 50.0 3.00e-01 100.0% 35.6%
5037599 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 45.0 2.89e-01 98.1% 22.4%
4134876 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.55 48.0 3.40e-01 100.0% 32.1%
4004055 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 46.0 3.16e-01 96.2% 32.1%
3289062 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 39.0 3.32e-01 100.0% 46.7%
3462176 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 43.0 2.60e-01 100.0% 42.3%
3235660 304.151.1.4 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › PF25899 0.52 41.0 3.25e-01 92.5% 88.0%
2502895 2.27.1.0 ↗ beta barrels › OB-fold 0.51 44.0 3.92e-01 100.0% 92.2%