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NC_030920.1__YP_009274848.1__BH780_gp141__00141

Bact-Vir

NC_030920.1__YP_009274848.1__BH780_gp141__00141

Identity

Accession:
NC_030920 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Eldridgevirus› Bacillus_phage_Eldridge

TaxID: 1776293

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-91
PDB
Domain cluster: rep: GQ478086.1__ACZ64040.1__X__00021__D3-94
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.71 35.0 4.55e-01 100.0% 84.3%
1te5A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.70 44.0 3.15e-01 93.3% 22.9%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.68 36.0 4.60e-01 100.0% 90.2%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.67 36.0 4.40e-01 100.0% 81.4%
4nv0A02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.65 34.0 3.62e-01 97.8% 56.1%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.64 36.0 4.39e-01 83.3% 86.2%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 37.0 4.16e-01 100.0% 77.6%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.59 39.0 4.06e-01 100.0% 71.8%
2shpB03 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 50.0 3.52e-01 93.3% 66.5%
4cckA03 3.90.930.40 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.59 40.0 3.47e-01 71.1% 93.8%
3ktnA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 41.0 2.78e-01 81.1% 89.4%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 38.0 2.69e-01 75.6% 80.6%
3ie7A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 41.0 2.85e-01 82.2% 89.3%
1ig8A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 44.0 3.95e-01 94.4% 97.0%
5dynA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 45.0 4.31e-01 95.6% 94.3%
6r2nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 44.0 3.88e-01 94.4% 96.4%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.52 43.0 4.33e-01 93.3% 95.5%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 47.0 4.06e-01 100.0% 72.3%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.52 44.0 4.01e-01 97.8% 76.0%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.47e-01 100.0% 50.9%
1s3zA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 37.0 3.17e-01 92.2% 46.9%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.51 38.0 4.08e-01 100.0% 92.2%
4q20A01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.51 38.0 3.98e-01 86.7% 86.6%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.51 44.0 3.26e-01 93.3% 44.4%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 43.0 3.37e-01 93.3% 70.2%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945393 7089.1.1.2 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 0.86 72.0 7.65e-01 88.9% 100.0%
3967728 274.1.1.34 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF4845 0.61 35.0 3.22e-01 74.4% 45.2%
3798258 109.21.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain 0.59 42.0 2.58e-01 75.6% 16.7%
3699736 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.29e-01 98.9% 74.5%
3199439 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 43.0 3.41e-01 78.9% 37.4%
3382011 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.57 41.0 4.36e-01 86.7% 86.3%
5055184 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 38.0 3.95e-01 70.0% 100.0%
4981234 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.56 37.0 4.12e-01 91.1% 92.3%
3615281 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 49.0 3.21e-01 100.0% 90.6%
4002771 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 36.0 3.18e-01 85.6% 43.0%
4986251 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.54 37.0 3.72e-01 70.0% 84.4%
4103800 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.54 44.0 4.04e-01 91.1% 80.0%
4050509 4096.1.1.1 ↗ a+b two layers › NAP-like › NAP-like › NAP-like › NAP 0.53 44.0 3.13e-01 90.0% 47.6%
4442902 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.53 43.0 3.90e-01 90.0% 76.8%
4253671 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.53 43.0 3.63e-01 90.0% 74.8%
4369846 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.53 43.0 3.93e-01 90.0% 77.5%
3451695 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 38.0 3.85e-01 77.8% 95.6%
4679171 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.52 43.0 3.99e-01 91.1% 81.7%
5046724 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.52 43.0 3.98e-01 91.1% 87.8%
4010765 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.52 42.0 3.84e-01 91.1% 80.8%
4632081 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.52 42.0 3.86e-01 91.1% 74.4%
3976963 7503.1.1.18 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF30449 0.52 38.0 3.36e-01 76.7% 88.5%
4606103 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.52 42.0 3.89e-01 91.1% 70.8%
4200618 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.52 42.0 3.92e-01 90.0% 80.9%
4302724 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.51 42.0 3.85e-01 91.1% 83.3%
4636438 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.51 41.0 3.82e-01 90.0% 82.5%
3355880 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 42.0 2.81e-01 88.9% 76.0%
4076432 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.51 41.0 3.76e-01 90.0% 80.8%
3931383 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.51 42.0 3.76e-01 92.2% 83.8%
4628536 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.50 41.0 3.83e-01 91.1% 84.3%
4431434 223.1.1.43 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.50 39.0 3.11e-01 81.1% 95.3%
4954572 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.50 41.0 3.77e-01 91.1% 84.2%