←Back to structures

NC_030933.1__YP_009275900.1__BH792_gp144__00143

Bact-Vir

NC_030933.1__YP_009275900.1__BH792_gp144__00143

Identity

Accession:
NC_030933 ↗
Kingdom:
phage

Quality

84.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Silviavirus› Staphylococcus_phage_Stau2

TaxID: 1200862

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-91
PDB
Domain cluster: rep: NC_048654.1__YP_009832427.1__HWB09_gp094__00098__D11-80
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.69 35.0 4.50e-01 97.3% 92.3%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 38.0 3.97e-01 100.0% 61.2%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.58 31.0 3.13e-01 100.0% 49.3%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.57 35.0 3.51e-01 83.8% 58.4%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 43.0 2.88e-01 86.5% 87.4%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 34.0 3.81e-01 86.5% 81.8%
1r4kA01 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.56 39.0 3.34e-01 75.7% 98.5%
2crhA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 37.0 3.39e-01 70.3% 97.1%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.55 39.0 4.24e-01 87.8% 100.0%
3psqB00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.54 36.0 2.78e-01 78.4% 28.0%
4rmmA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 37.0 3.09e-01 74.3% 83.0%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 40.0 3.02e-01 83.8% 90.3%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 38.0 3.10e-01 82.4% 47.0%
4ns4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 39.0 2.80e-01 87.8% 94.1%
1vw4F01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 36.0 3.39e-01 75.7% 98.9%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.51 36.0 3.48e-01 78.4% 95.7%
1fy2A00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.50 42.0 3.14e-01 100.0% 80.5%
5d1pA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 36.0 3.74e-01 74.3% 94.0%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.50 38.0 3.60e-01 85.1% 90.4%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.50 35.0 3.18e-01 75.7% 98.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3910972 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.64 29.0 3.18e-01 87.8% 50.0%
4017229 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.61 50.0 3.25e-01 93.2% 72.5%
3724804 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.60 49.0 3.24e-01 93.2% 77.7%
3188702 7579.1.1.53 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Say1_Mug180 0.60 48.0 3.10e-01 93.2% 76.8%
3722452 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.59 49.0 3.23e-01 93.2% 78.2%
2080140 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.59 44.0 2.85e-01 81.1% 89.5%
3623405 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.58 41.0 3.35e-01 75.7% 78.7%
3796567 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.58 42.0 3.22e-01 77.0% 66.1%
4004760 64.1.1.5 ↗ beta meanders › WW domain-like › WW domain › WW domain › DUF333 0.58 35.0 4.14e-01 70.3% 100.0%
3749245 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.57 33.0 2.79e-01 100.0% 31.5%
3715045 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.56 30.0 3.08e-01 98.6% 51.4%
3419793 5.1.10.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF295 0.56 44.0 3.60e-01 83.8% 76.3%
4979291 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.54 37.0 3.69e-01 70.3% 88.0%
3307718 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.54 43.0 3.75e-01 100.0% 55.8%
3702508 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.53 46.0 3.44e-01 100.0% 42.1%
5020252 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 36.0 3.19e-01 73.0% 73.3%
4366164 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.52 37.0 2.39e-01 77.0% 84.7%
3313424 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.52 44.0 3.45e-01 100.0% 45.6%
3642252 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 40.0 3.57e-01 85.1% 76.4%
4950373 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.52 40.0 3.33e-01 86.5% 69.3%
3277405 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.52 43.0 3.16e-01 100.0% 64.4%
5011354 316.1.1.39 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF2204 0.51 42.0 3.16e-01 90.5% 57.3%
3686841 5.1.3.27 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_4 0.51 42.0 2.85e-01 100.0% 88.8%
4974908 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.51 38.0 3.03e-01 79.7% 45.5%
3224719 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 35.0 2.81e-01 73.0% 65.0%
3211250 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 35.0 2.54e-01 73.0% 46.6%
5068179 1143.1.1.1 ↗ beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.50 44.0 4.20e-01 100.0% 92.2%
3675412 386.1.1.6 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.50 35.0 3.43e-01 79.7% 67.5%