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NC_030935.1__YP_009276104.1__BH785_gp11__00011

Bact-Vir

NC_030935.1__YP_009276104.1__BH785_gp11__00011

Identity

Accession:
NC_030935 ↗
Kingdom:
phage

Quality

82.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grutrevirus› Gordonia_phage_GRU3

TaxID: 1647473

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-87
PDB
Domain cluster: rep: MG835450.1__AUV61425.1__phiPsal1_016__00016__D4-78
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 38.0 3.77e-01 100.0% 54.0%
3fmaA00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.64 35.0 3.61e-01 97.6% 54.3%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 34.0 3.06e-01 97.6% 37.6%
2ii7H00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.62 40.0 3.73e-01 97.6% 51.9%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.60 37.0 3.24e-01 97.6% 39.1%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.60 44.0 4.31e-01 94.0% 70.2%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.59 40.0 3.56e-01 100.0% 49.2%
4jneA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.59 40.0 3.97e-01 82.1% 67.0%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 39.0 3.79e-01 100.0% 61.5%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 43.0 4.17e-01 86.9% 72.3%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.57 36.0 3.28e-01 97.6% 47.0%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 42.0 3.72e-01 98.8% 55.5%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 33.0 3.42e-01 96.4% 60.0%
3d2fA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.56 41.0 4.14e-01 83.3% 76.2%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.56 37.0 3.65e-01 100.0% 62.9%
1ok0A00 2.60.40.20 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-amylase inhibitor 0.55 32.0 3.35e-01 96.4% 62.2%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 43.0 3.26e-01 90.5% 78.8%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 43.0 3.29e-01 97.6% 94.9%
2uytA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 42.0 3.20e-01 95.2% 63.4%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.47e-01 100.0% 59.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3244285 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.68 37.0 3.96e-01 98.8% 60.0%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.65 36.0 4.60e-01 92.9% 100.0%
3295690 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.64 34.0 3.80e-01 95.2% 64.6%
379802 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.64 35.0 3.51e-01 97.6% 51.2%
4028910 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.63 33.0 3.70e-01 95.2% 64.6%
4048083 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.59 46.0 3.40e-01 82.1% 89.5%
3738042 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.58 39.0 4.26e-01 70.2% 90.0%
5043110 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.57 45.0 3.12e-01 88.1% 90.6%
3709879 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.55 39.0 4.08e-01 72.6% 82.7%
3170065 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.54 46.0 3.07e-01 97.6% 80.7%
4515517 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.54 36.0 3.61e-01 100.0% 65.6%
3488744 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.54 33.0 3.60e-01 94.0% 78.5%
3269341 101.1.10.22 ↗ alpha arrays › HTH › HTH › Cyclin-like › ORC6 0.53 39.0 3.88e-01 88.1% 73.3%
4632256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 4.47e-01 95.2% 97.3%
3492110 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 32.0 3.56e-01 94.0% 78.5%
1873429 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.52 44.0 3.28e-01 98.8% 66.1%
2989723 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.52 40.0 4.27e-01 100.0% 100.0%
4135543 221.1.1.17 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C 0.52 34.0 3.08e-01 98.8% 47.9%
4864730 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.51 38.0 3.47e-01 100.0% 58.3%