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NC_030936.1__YP_009276290.1__BH772_gp032__00171

Bact-Vir

NC_030936.1__YP_009276290.1__BH772_gp032__00171

Identity

Accession:
NC_030936 ↗
Kingdom:
phage

Quality

88.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Smoothievirus› Gordonia_phage_Bachita

TaxID: 1838061

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-63
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4uobA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.75 59.0 4.68e-01 85.7% 55.6%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 55.0 4.12e-01 93.7% 44.0%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.64 54.0 4.46e-01 98.4% 100.0%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.64 54.0 4.30e-01 100.0% 71.9%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 49.0 4.70e-01 85.7% 97.3%
2xl4A00 1.20.120.1420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › LntA helical domain 0.62 42.0 3.27e-01 100.0% 30.6%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 48.0 4.01e-01 88.9% 53.1%
1ldjA02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.60 42.0 3.39e-01 73.0% 54.5%
1cnt200 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 53.0 4.17e-01 100.0% 60.8%
2f8lA01 1.10.150.470 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.59 50.0 4.68e-01 98.4% 76.5%
2f2cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 47.0 3.97e-01 90.5% 53.2%
2n3eA01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.58 47.0 3.97e-01 93.7% 91.3%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.58 41.0 3.55e-01 100.0% 47.1%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.57 40.0 3.50e-01 74.6% 64.0%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.56 47.0 4.10e-01 98.4% 77.7%
2a6hF01 1.20.120.1810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 46.0 3.45e-01 100.0% 43.7%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 40.0 3.78e-01 76.2% 98.7%
7kb2B01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.53 39.0 2.95e-01 81.0% 29.4%
3gn4A00 6.10.220.10 Special › Helix non-globular › Helical scaffold and wing domains of SecA › 0.53 38.0 3.11e-01 77.8% 52.7%
2nxpB00 1.25.40.500 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain 0.52 43.0 3.44e-01 100.0% 83.4%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.52 44.0 3.28e-01 93.7% 78.6%
1v07A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 43.0 3.71e-01 100.0% 90.0%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 41.0 3.84e-01 100.0% 75.9%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.51 41.0 3.17e-01 100.0% 46.6%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 34.0 3.13e-01 100.0% 48.4%
1e2aA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 39.0 3.31e-01 100.0% 51.0%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.50 44.0 3.82e-01 100.0% 80.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3673267 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.63 47.0 4.66e-01 84.1% 100.0%
3643402 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.63 52.0 4.08e-01 93.7% 65.7%
4660860 2484.1.1.222 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UPF0236 0.63 53.0 3.59e-01 100.0% 61.8%
3264196 5067.1.1.13 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ALMT 0.62 54.0 4.05e-01 100.0% 95.2%
4580956 2484.1.1.222 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UPF0236 0.60 49.0 3.49e-01 100.0% 71.9%
4951565 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.58 44.0 3.29e-01 85.7% 89.4%
5043726 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.58 48.0 3.37e-01 100.0% 39.6%
4023124 109.4.1.815 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF6604 0.56 48.0 3.14e-01 95.2% 95.3%
5023780 7516.1.1.26 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3 0.56 49.0 3.11e-01 100.0% 54.0%
4990623 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.55 36.0 3.53e-01 90.5% 61.4%
4163021 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.54 43.0 3.93e-01 100.0% 66.0%
4649120 206.1.2.4 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.54 44.0 2.98e-01 96.8% 50.5%
5057930 601.7.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › KNTase_C 0.52 42.0 3.45e-01 100.0% 48.3%
3337945 601.18.1.14 ↗ alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › MPH2 0.51 41.0 3.57e-01 88.9% 66.0%
4984119 2004.1.1.94 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 0.51 43.0 2.99e-01 100.0% 52.1%
3880679 109.4.1.532 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4704 0.51 43.0 3.48e-01 100.0% 64.4%
4987735 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.51 41.0 3.56e-01 100.0% 93.9%
4944933 608.1.1.0 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like 0.50 39.0 3.34e-01 87.3% 70.9%
3232875 11.2.1.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › Anillin 0.50 45.0 3.07e-01 100.0% 53.2%
3449495 601.18.1.14 ↗ alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › MPH2 0.50 37.0 3.02e-01 85.7% 59.7%