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NC_030946.1__YP_009276879.1__BH783_gp17__00017

Bact-Vir

Identity

Accession:: NC_030946 ↗
Kingdom:: phage

Quality

76.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Adrianbuildvirus› Streptococcus_phage_phiARI0923

TaxID: 1701842

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-161

PDB

Domain cluster: rep: AB044554.1__BAA97847.1__X__00040__D16-168

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3kdrA02	3.40.140.120	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 ›	0.76	53.0	5.33e-01	84.8%	70.9%
3h8zA02	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.62	30.0	4.08e-01	84.0%	89.1%
2eczA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.59	31.0	4.18e-01	100.0%	94.3%
2ekhA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.58	31.0	3.79e-01	99.2%	80.0%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2575643	4.1.1.8 ↗	beta barrels › SH3 › SH3 › SH3 › IN_DBD_C	0.69	34.0	4.56e-01	98.4%	87.0%
3885696	4.1.1.54 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_2	0.68	34.0	4.69e-01	89.6%	95.4%
3516244	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.64	34.0	4.27e-01	100.0%	82.5%
3566206	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.64	32.0	4.31e-01	95.2%	88.6%
3765007	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.63	33.0	4.36e-01	93.6%	91.4%
3585447	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.63	31.0	3.87e-01	99.2%	75.0%
3885695	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.63	35.0	4.27e-01	100.0%	85.0%
3899851	4.1.1.92 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_9	0.62	31.0	4.29e-01	97.6%	93.8%
3625909	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.62	32.0	3.94e-01	100.0%	77.5%
4104114	4.1.1.54 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_2	0.62	31.0	4.20e-01	99.2%	92.3%
3755099	604.1.1.97 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SH3_1	0.62	33.0	3.97e-01	100.0%	77.6%
3398702	4.1.1.92 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_9	0.61	30.0	4.28e-01	99.2%	100.0%
3522910	4.1.1.92 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_9	0.61	31.0	3.99e-01	99.2%	84.0%
3899829	4.1.1.92 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_9	0.60	32.0	4.15e-01	99.2%	89.3%
3896701	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.60	33.0	3.90e-01	96.8%	76.7%
3876823	4.1.1.92 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_9	0.59	30.0	3.88e-01	98.4%	84.0%
3943006	4038.1.1.1 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal	0.55	51.0	3.77e-01	96.8%	75.5%
3487686	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.55	31.0	3.69e-01	92.0%	81.2%
4139778	4.1.1.97 ↗	beta barrels › SH3 › SH3 › SH3 › DUF150_C	0.52	29.0	3.66e-01	90.4%	93.2%
3618274	4.1.1.54 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_2	0.51	31.0	3.65e-01	96.0%	84.4%
3554994	4.1.1.54 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_2	0.50	32.0	3.77e-01	77.6%	91.0%

D2 high residues 193-267

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3590909	4038.1.1.1 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal	0.64	45.0	3.11e-01	74.7%	23.3%

D3 medium residues 268-323

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1qmgA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.61	46.0	2.98e-01	85.7%	55.6%
1v9nA02	3.30.1370.60	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain	0.58	41.0	2.70e-01	73.2%	85.4%
2e1vA01	3.30.559.10	Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain	0.54	43.0	2.95e-01	91.1%	48.9%
2plqA00	3.60.110.10	Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase	0.52	42.0	2.64e-01	94.6%	28.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4932446	504.1.1.0 ↗	a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB	0.66	46.0	3.61e-01	87.5%	35.0%

D4 medium residues 324-380

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3cuqA03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.62	41.0	3.61e-01	73.7%	47.5%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3943006	4038.1.1.1 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal	0.94	63.0	3.86e-01	70.2%	14.1%
4032512	101.1.2.6 ↗	alpha arrays › HTH › HTH › winged helix domain › GntR	0.57	41.0	3.73e-01	78.9%	88.7%
3786649	101.1.2.392 ↗	alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH	0.56	41.0	3.58e-01	80.7%	95.8%
3784215	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	41.0	3.48e-01	87.7%	91.4%
3781211	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.53	37.0	3.09e-01	75.4%	49.5%
3788712	101.1.1.76 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2	0.52	37.0	2.97e-01	75.4%	87.8%
4930041	102.2.1.0 ↗	alpha arrays › HhH/H2TH › H2TH › H2TH	0.52	36.0	3.57e-01	73.7%	71.7%
4941079	2004.1.1.30 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C	0.52	39.0	2.68e-01	78.9%	72.8%
3939662	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.52	37.0	2.91e-01	75.4%	43.3%
4016219	109.4.1.161 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › mTOR_dom	0.52	41.0	2.64e-01	93.0%	76.6%
3939023	101.1.1.76 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2	0.52	38.0	3.25e-01	77.2%	72.2%
3935878	101.1.1.76 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2	0.51	35.0	2.98e-01	70.2%	84.2%
3720852	101.1.1.247 ↗	alpha arrays › HTH › HTH › Three-helical HTH › zf-H2C2	0.51	36.0	3.33e-01	75.4%	90.7%
3939171	101.1.1.76 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2	0.51	36.0	3.08e-01	75.4%	55.8%
3242555	101.1.1.76 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2	0.50	34.0	2.80e-01	73.7%	40.8%