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NC_030949.1__YP_009277231.1__phiCTC2A_24__00024

Bact-Vir

NC_030949.1__YP_009277231.1__phiCTC2A_24__00024

Identity

Accession:
NC_030949 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_phiCTC2A

TaxID: 1567015

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 52-103
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lzwA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.82 65.0 5.29e-01 92.3% 48.4%
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.80 56.0 4.70e-01 75.0% 46.0%
3fdiB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.79 62.0 4.20e-01 84.6% 73.2%
4didB01 1.20.58.450 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog 0.79 64.0 4.89e-01 88.5% 68.4%
2l2dA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.78 52.0 4.56e-01 71.2% 49.3%
2f4lA03 3.10.28.20 Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains 0.77 56.0 4.73e-01 75.0% 60.0%
1owfA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.77 54.0 4.35e-01 73.1% 81.2%
3um7A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.77 53.0 4.11e-01 71.2% 64.1%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.76 64.0 5.41e-01 98.1% 57.8%
2lnzA00 1.10.286.70 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › Get5 dimerization domain 0.74 50.0 5.48e-01 73.1% 92.5%
8h6qD01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.73 58.0 3.56e-01 86.5% 32.6%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.72 61.0 5.51e-01 92.3% 72.5%
4dsfA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.72 49.0 3.81e-01 88.5% 33.6%
2bpoA04 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.71 59.0 4.13e-01 90.4% 32.7%
1f20A01 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.70 59.0 4.11e-01 92.3% 33.1%
1miwA03 1.20.58.560 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 51.0 4.23e-01 100.0% 44.0%
1c1dA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 47.0 3.19e-01 76.9% 19.3%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.66 55.0 3.94e-01 98.1% 78.4%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 51.0 4.60e-01 96.2% 60.3%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.64 46.0 4.42e-01 88.5% 67.2%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 50.0 4.28e-01 98.1% 51.1%
2p0wA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 54.0 5.39e-01 100.0% 98.1%
3gg7A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.62 50.0 3.27e-01 92.3% 24.3%
1h1oA01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.60 48.0 4.28e-01 88.5% 96.0%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 52.0 4.29e-01 98.1% 86.2%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 47.0 4.39e-01 86.5% 69.8%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.60 43.0 3.58e-01 76.9% 84.4%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.59 45.0 3.85e-01 82.7% 59.3%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 42.0 3.29e-01 80.8% 32.1%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 44.0 3.90e-01 88.5% 55.1%
2ze7A02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.58 46.0 3.68e-01 86.5% 49.0%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.58 47.0 4.11e-01 88.5% 67.1%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.58 44.0 4.07e-01 82.7% 65.7%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.58 50.0 4.71e-01 96.2% 82.3%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.57 45.0 3.96e-01 98.1% 68.9%
2ke4A00 6.10.140.470 Special › Helix non-globular › Helix Hairpins › 0.57 44.0 3.68e-01 88.5% 48.0%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.57 45.0 3.53e-01 88.5% 46.5%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.56 47.0 4.30e-01 90.4% 80.3%
3l9tA01 1.10.1240.70 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.56 44.0 3.85e-01 86.5% 59.0%
2b6cA01 1.20.1660.10 Mainly Alpha › Up-down Bundle › ARM repeat fold › Hypothetical protein (EF3068) 0.56 42.0 3.42e-01 88.5% 41.4%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.56 50.0 3.98e-01 100.0% 65.7%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.56 45.0 3.80e-01 88.5% 56.5%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 44.0 4.18e-01 100.0% 82.1%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.55 40.0 3.80e-01 76.9% 67.2%
5mj6A04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.52 43.0 2.73e-01 100.0% 16.6%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 45.0 3.33e-01 96.2% 98.5%
1jalA03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.52 39.0 3.44e-01 86.5% 54.3%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 45.0 4.37e-01 100.0% 100.0%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3238586 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.89 76.0 6.82e-01 92.3% 70.0%
4950805 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.88 76.0 4.75e-01 96.2% 18.9%
4928641 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.86 75.0 6.60e-01 96.2% 68.0%
5013347 101.1.2.946 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26555 0.85 66.0 7.01e-01 84.6% 100.0%
4936146 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.85 70.0 6.85e-01 88.5% 100.0%
3787090 308.1.1.0 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.85 64.0 4.93e-01 90.4% 38.2%
3223878 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.84 74.0 5.31e-01 100.0% 42.8%
3503894 308.1.1.2 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.84 65.0 5.54e-01 92.3% 53.8%
5044307 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.83 59.0 4.95e-01 75.0% 56.5%
5038482 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.83 65.0 4.09e-01 86.5% 17.3%
5044812 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 74.0 4.78e-01 100.0% 64.4%
4960839 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 73.0 5.86e-01 100.0% 73.0%
4274974 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.81 56.0 4.49e-01 73.1% 38.0%
4044190 308.1.1.2 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.81 64.0 5.15e-01 92.3% 46.3%
5051773 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.80 57.0 4.70e-01 75.0% 53.3%
5058906 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 71.0 6.10e-01 98.1% 72.5%
3406728 308.1.1.2 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.80 63.0 5.18e-01 92.3% 48.9%
4938693 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.80 70.0 5.99e-01 100.0% 78.8%
4959424 103.6.1.0 ↗ alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain 0.79 66.0 6.53e-01 92.3% 96.4%
4406214 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.79 67.0 5.56e-01 98.1% 55.9%
4543015 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.78 55.0 4.70e-01 75.0% 47.5%
4379527 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.77 66.0 5.66e-01 98.1% 61.2%
4042981 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.77 55.0 4.61e-01 75.0% 48.2%
4449615 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.77 65.0 5.49e-01 98.1% 60.0%
5042980 101.35.1.41 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF26555 0.76 60.0 6.12e-01 88.5% 96.0%
4995680 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.76 67.0 6.42e-01 100.0% 98.3%
3243507 101.1.1.289 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.75 65.0 6.07e-01 100.0% 83.1%
3727687 2003.1.1.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.73 66.0 4.02e-01 100.0% 84.4%
4102625 132.3.1.1 ↗ alpha bundles › ACP-like › Hypothetical protein YjbJ › Hypothetical protein YjbJ › CsbD 0.73 59.0 5.58e-01 86.5% 80.0%
1124142 3788.1.1.1 ↗ alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › VPR 0.73 49.0 4.04e-01 75.0% 38.5%
3893 132.3.1.1 ↗ alpha bundles › ACP-like › Hypothetical protein YjbJ › Hypothetical protein YjbJ › CsbD 0.72 61.0 5.51e-01 92.3% 72.5%
3592477 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.72 60.0 5.82e-01 98.1% 91.7%
4963009 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 60.0 5.29e-01 98.1% 70.0%
5023675 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.71 51.0 3.79e-01 76.9% 30.1%
3636418 2003.1.1.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.70 61.0 3.78e-01 98.1% 41.0%
1634610 2498.5.1.0 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.69 47.0 4.61e-01 75.0% 66.1%
3727217 101.1.2.384 ↗ alpha arrays › HTH › HTH › winged helix domain › Myb_DNA-bind_8 0.69 57.0 5.81e-01 96.2% 100.0%
4156281 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.69 58.0 3.65e-01 98.1% 41.8%
4466431 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.68 57.0 3.61e-01 98.1% 41.4%
4497958 7524.1.1.3 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › LuxC 0.68 47.0 2.90e-01 73.1% 30.0%
3469102 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.67 48.0 3.68e-01 80.8% 33.3%
5000156 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 51.0 5.16e-01 88.5% 90.0%
3665480 109.4.1.1559 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tic110 0.65 56.0 3.54e-01 100.0% 22.5%
3956017 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.65 48.0 3.27e-01 82.7% 21.0%
3923696 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.64 44.0 3.79e-01 75.0% 45.6%
4157292 3317.1.1.2 ↗ alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.63 40.0 3.90e-01 76.9% 56.7%
4018586 7579.1.1.59 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LIDHydrolase 0.63 54.0 3.23e-01 96.2% 17.3%
3458695 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.63 48.0 4.40e-01 84.6% 78.6%
4945888 5041.1.1.0 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.62 45.0 3.92e-01 76.9% 96.2%
3487368 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.61 48.0 4.63e-01 96.2% 90.8%
3682662 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.61 47.0 3.46e-01 94.2% 33.1%
3840710 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.61 53.0 3.35e-01 100.0% 76.4%
5053145 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.60 46.0 4.17e-01 82.7% 87.1%
4012878 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.00e-01 100.0% 67.0%
3198319 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 47.0 2.87e-01 88.5% 17.3%
5048929 605.6.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.57 47.0 4.22e-01 88.5% 74.3%
4990946 5058.1.1.102 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › DUF1634 0.57 41.0 3.49e-01 80.8% 45.6%
3651776 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.56 48.0 3.31e-01 98.1% 61.1%
3204035 1.1.17.4 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.56 47.0 2.83e-01 90.4% 17.1%
3698039 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.53 44.0 3.37e-01 96.2% 65.9%
5034517 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.53 35.0 3.55e-01 96.2% 70.0%
3357244 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.50 43.0 3.45e-01 96.2% 68.6%